Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G161700.1 | Wheat | cytosol | 96.81 | 96.81 |
| TraesCS6B01G189500.1 | Wheat | cytosol | 96.49 | 96.79 |
| HORVU6Hr1G032720.1 | Barley | cytosol | 92.33 | 91.75 |
| OQU84582 | Sorghum | cytosol | 64.22 | 62.62 |
| Zm00001d053654_P001 | Maize | plastid | 59.11 | 62.5 |
| Zm00001d015796_P001 | Maize | cytosol | 38.34 | 62.5 |
| Os02t0198800-01 | Rice | cytosol, nucleus | 66.13 | 55.65 |
| GSMUA_AchrUn_... | Banana | cytosol | 42.17 | 47.31 |
| CDY27882 | Canola | nucleus | 43.45 | 46.74 |
| CDY00849 | Canola | nucleus | 43.45 | 46.74 |
| VIT_12s0057g01390.t01 | Wine grape | mitochondrion | 46.33 | 46.47 |
| AT4G12690.2 | Thale cress | nucleus | 42.17 | 46.32 |
| Bra015139.1-P | Field mustard | nucleus | 43.77 | 45.36 |
| PGSC0003DMT400069001 | Potato | plastid | 44.09 | 44.81 |
| Solyc12g044670.1.1 | Tomato | plastid | 44.09 | 44.81 |
| AT2G04220.1 | Thale cress | cytosol | 43.45 | 44.3 |
| PGSC0003DMT400006698 | Potato | mitochondrion | 42.17 | 42.86 |
| GSMUA_Achr3P12010_001 | Banana | cytosol | 37.06 | 42.03 |
| KRH16994 | Soybean | cytosol | 40.26 | 41.31 |
| Solyc03g121220.2.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 41.85 | 41.2 |
| CDX85324 | Canola | plastid | 36.1 | 40.65 |
| KRH72631 | Soybean | cytosol | 39.3 | 40.07 |
| CDX86317 | Canola | plastid | 39.3 | 40.07 |
| AT5G48270.1 | Thale cress | plastid | 40.89 | 39.75 |
| CDY48744 | Canola | mitochondrion, plastid | 38.34 | 39.47 |
| KRG90008 | Soybean | plastid | 39.3 | 39.05 |
| Bra037498.1-P | Field mustard | plastid | 40.26 | 39.01 |
| CDY00069 | Canola | plastid | 38.34 | 38.96 |
| CDY05690 | Canola | mitochondrion, plastid | 37.06 | 38.67 |
| CDY19961 | Canola | plastid | 37.38 | 38.24 |
| Bra020708.1-P | Field mustard | mitochondrion | 39.3 | 38.2 |
| Bra036180.1-P | Field mustard | plastid | 38.98 | 37.89 |
| AT3G13229.1 | Thale cress | cytosol | 34.5 | 37.37 |
| Solyc12g015900.1.1 | Tomato | cytosol | 35.14 | 36.91 |
| PGSC0003DMT400076600 | Potato | cytosol | 34.82 | 36.58 |
| CDY66553 | Canola | cytosol | 32.59 | 36.17 |
| KRH14191 | Soybean | cytosol | 35.14 | 35.37 |
| Bra001495.1-P | Field mustard | cytosol | 32.59 | 35.05 |
| CDX82547 | Canola | cytosol | 32.59 | 35.05 |
| TraesCS3D01G411600.1 | Wheat | plastid | 36.1 | 34.88 |
| TraesCS2D01G204300.1 | Wheat | plastid | 31.31 | 34.63 |
| TraesCS1D01G026300.1 | Wheat | cytosol | 31.95 | 32.89 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 30.03 | 30.52 |
| TraesCS5D01G137700.1 | Wheat | plastid | 23.0 | 22.43 |
| TraesCS4D01G129600.1 | Wheat | plastid | 22.68 | 22.33 |
| TraesCS5D01G233300.1 | Wheat | plastid | 29.39 | 22.22 |
| TraesCS2D01G290200.1 | Wheat | cytosol | 22.36 | 21.08 |
| TraesCS7D01G277700.1 | Wheat | plastid | 19.49 | 20.2 |
| TraesCS4D01G010300.1 | Wheat | cytosol | 19.81 | 17.66 |
| TraesCS7D01G147500.1 | Wheat | plastid | 20.45 | 16.29 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G150500.1 | EnsemblPlantsGene:TraesCS6D01G150500 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF2 | PFAM:PF05910 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:124144200..124145141
Molecular Weight (calculated)
34237.2 Da
IEP (calculated)
7.237
GRAVY (calculated)
-0.376
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MHKRSKSCEP SRNEQRGGVH GATASDDSIT GKVASSSSAT AQCSTMTVYL VRINGTEHLV TAVWNKNIIN QSFTITIDRH GDGTGSGGGD DGALSLKVEL
101: KPWPFWSKKG LKSFFLDGHR LDVFWDLRSA KFPASSPEPA SGYFVALVSQ EQVVLTLGDL KKDAYKRSKC RPSLEDAVPL CRRETVFGRR SFVARGWLDT
201: SRKDHDIVIE ASLAGPREPE MAITVDGRAL VQVKNLQWKF RGNETVLVDQ SPVQVLWDVH DWIFAGPGSQ AVFAFKPGAP PEVNSDEAGL ESGSGIPGDP
301: GDYSFFLHAW KTD
101: KPWPFWSKKG LKSFFLDGHR LDVFWDLRSA KFPASSPEPA SGYFVALVSQ EQVVLTLGDL KKDAYKRSKC RPSLEDAVPL CRRETVFGRR SFVARGWLDT
201: SRKDHDIVIE ASLAGPREPE MAITVDGRAL VQVKNLQWKF RGNETVLVDQ SPVQVLWDVH DWIFAGPGSQ AVFAFKPGAP PEVNSDEAGL ESGSGIPGDP
301: GDYSFFLHAW KTD
001: MSFRSHSRGS SQFAEKVTED PVTYKTAQST VTCIYQAHIS GFWRNVTVLW SKNLMNHSLM VMVTNVEGDM NYCCKVDLKP WHFWNKKGYK SFDVEGNPVE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE
Arabidopsis Description
DUF868 family protein (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SI11]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.