Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G04220.1 | Thale cress | cytosol | 81.75 | 75.9 |
| Solyc12g044670.1.1 | Tomato | plastid | 69.82 | 64.61 |
| PGSC0003DMT400069001 | Potato | plastid | 69.82 | 64.61 |
| VIT_12s0057g01390.t01 | Wine grape | mitochondrion | 68.42 | 62.5 |
| KRH16994 | Soybean | cytosol | 66.67 | 62.3 |
| KRH72631 | Soybean | cytosol | 65.61 | 60.91 |
| PGSC0003DMT400006698 | Potato | mitochondrion | 65.61 | 60.71 |
| Solyc03g121220.2.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 65.61 | 58.8 |
| AT5G48270.1 | Thale cress | plastid | 63.16 | 55.9 |
| GSMUA_AchrUn_... | Banana | cytosol | 54.04 | 55.2 |
| KRG90008 | Soybean | plastid | 60.35 | 54.6 |
| GSMUA_Achr3P12010_001 | Banana | cytosol | 50.88 | 52.54 |
| Zm00001d015796_P001 | Maize | cytosol | 33.33 | 49.48 |
| Zm00001d053654_P001 | Maize | plastid | 47.02 | 45.27 |
| OQU84582 | Sorghum | cytosol | 48.42 | 42.99 |
| TraesCS6B01G189500.1 | Wheat | cytosol | 46.67 | 42.63 |
| TraesCS6D01G150500.1 | Wheat | nucleus | 46.32 | 42.17 |
| TraesCS6A01G161700.1 | Wheat | cytosol | 45.96 | 41.85 |
| HORVU6Hr1G032720.1 | Barley | cytosol | 45.61 | 41.27 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 41.05 | 40.48 |
| AT3G13229.1 | Thale cress | cytosol | 41.05 | 40.48 |
| AT3G04860.1 | Thale cress | plastid | 40.0 | 39.45 |
| Os02t0198800-01 | Rice | cytosol, nucleus | 45.61 | 34.95 |
| AT2G27770.1 | Thale cress | plastid | 27.72 | 24.69 |
| AT5G11000.1 | Thale cress | cytosol, plastid | 30.18 | 22.11 |
| AT2G25200.1 | Thale cress | plastid | 26.32 | 21.19 |
| AT2G36470.1 | Thale cress | nucleus | 23.16 | 20.18 |
Protein Annotations
| MapMan:35.2 | EntrezGene:826881 | UniProt:A0A178V2Y9 | ProteinID:AEE83163.1 | ProteinID:AEE83164.1 | EMBL:AK229335 |
| ArrayExpress:AT4G12690 | EnsemblPlantsGene:AT4G12690 | RefSeq:AT4G12690 | TAIR:AT4G12690 | RefSeq:AT4G12690-TAIR-G | EnsemblPlants:AT4G12690.2 |
| TAIR:AT4G12690.2 | EMBL:AY085094 | Unigene:At.33452 | EMBL:BT026055 | ProteinID:CAB40986.1 | ProteinID:CAB78311.1 |
| InterPro:DUF868_pln | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009506 | RefSeq:NP_001190706.1 | RefSeq:NP_193005.1 |
| ProteinID:OAO99261.1 | PFAM:PF05910 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR31972 |
| PANTHER:PTHR31972:SF2 | UniProt:Q9SU17 | UniParc:UPI000009F3D5 | SEG:seg | : | : |
Description
At4g12690 [Source:UniProtKB/TrEMBL;Acc:Q9SU17]
Coordinates
chr4:+:7480556..7482150
Molecular Weight (calculated)
32795.8 Da
IEP (calculated)
8.199
GRAVY (calculated)
-0.419
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLRSESSTA EKITEDPVTY KTAQSSVTCI YQAHMVGFWR NVRVLWSKNL MNHSLTVMVT SVQGDMNYCC KVDLKPWHFW YKKGYKSFEV EGNQVDVYWD
101: FRSAKFNGGP EPSSDFYVAL VSEEEVVLLL GDHKKKAFKR TKSRPSLVDA ALFYKKENVF GKKIFSTRAK FHDRKREHEI VVESSTGAKE PEMWISVDGI
201: VLVQVRNLQW KFRGNQTVLV DKEPVQVFWD VYDWLFSTPG TGHGLFIFKP ESGESETSNE TKNCSASSSS SSSEFCLFLY AWKLE
101: FRSAKFNGGP EPSSDFYVAL VSEEEVVLLL GDHKKKAFKR TKSRPSLVDA ALFYKKENVF GKKIFSTRAK FHDRKREHEI VVESSTGAKE PEMWISVDGI
201: VLVQVRNLQW KFRGNQTVLV DKEPVQVFWD VYDWLFSTPG TGHGLFIFKP ESGESETSNE TKNCSASSSS SSSEFCLFLY AWKLE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.