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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • peroxisome 1
  • plastid 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:golgi, nucleus, peroxisome, plasma membrane, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G189500.1 Wheat cytosol 92.38 93.27
TraesCS6A01G161700.1 Wheat cytosol 91.75 92.33
TraesCS6D01G150500.1 Wheat nucleus 91.75 92.33
Zm00001d015796_P001 Maize cytosol 38.41 63.02
Zm00001d053654_P001 Maize plastid 59.05 62.84
OQU84582 Sorghum cytosol 63.81 62.62
Os02t0198800-01 Rice cytosol, nucleus 65.71 55.65
GSMUA_AchrUn_... Banana cytosol 41.27 46.59
VIT_12s0057g01390.t01 Wine grape mitochondrion 46.03 46.47
CDY27882 Canola nucleus 42.86 46.39
CDY00849 Canola nucleus 42.86 46.39
PGSC0003DMT400069001 Potato plastid 44.76 45.78
Solyc12g044670.1.1 Tomato plastid 44.76 45.78
AT4G12690.2 Thale cress nucleus 41.27 45.61
Bra015139.1-P Field mustard nucleus 43.17 45.03
AT2G04220.1 Thale cress cytosol 42.86 43.97
PGSC0003DMT400006698 Potato mitochondrion 42.86 43.83
Solyc03g121220.2.1 Tomato cytosol, mitochondrion, nucleus, plastid 42.54 42.14
KRH16994 Soybean cytosol 40.32 41.64
GSMUA_Achr3P12010_001 Banana cytosol 35.87 40.94
KRH72631 Soybean cytosol 39.68 40.72
CDX85324 Canola plastid 35.24 39.93
CDX86317 Canola plastid 38.73 39.74
KRG90008 Soybean plastid 39.68 39.68
CDY48744 Canola mitochondrion, plastid 38.1 39.47
AT5G48270.1 Thale cress plastid 40.32 39.44
Bra037498.1-P Field mustard plastid 39.68 38.7
CDY00069 Canola plastid 37.78 38.64
CDY05690 Canola mitochondrion, plastid 36.51 38.33
CDY19961 Canola plastid 37.14 38.24
Bra020708.1-P Field mustard mitochondrion 38.73 37.89
Bra036180.1-P Field mustard plastid 38.41 37.58
KRH14191 Soybean cytosol 36.19 36.66
HORVU3Hr1G092470.1 Barley plastid 36.51 36.51
PGSC0003DMT400076600 Potato cytosol 33.65 35.57
Solyc12g015900.1.1 Tomato cytosol 33.65 35.57
AT3G13229.1 Thale cress cytosol 32.38 35.29
CDY66553 Canola cytosol 31.43 35.11
HORVU2Hr1G038060.1 Barley plastid 30.48 34.29
CDX82547 Canola cytosol 31.43 34.02
Bra001495.1-P Field mustard cytosol 31.43 34.02
HORVU5Hr1G109570.1 Barley cytosol, plastid 30.16 32.53
HORVU5Hr1G041450.1 Barley plastid 23.81 23.29
HORVU7Hr1G058790.3 Barley plastid 19.05 19.8
HORVU5Hr1G065520.1 Barley plastid 28.25 19.69
HORVU4Hr1G001870.2 Barley cytosol 19.05 17.44
HORVU7Hr1G029920.1 Barley mitochondrion 20.0 15.83
Protein Annotations
EMBL:AK375998EnsemblPlants:HORVU6Hr1G032720.1EnsemblPlantsGene:HORVU6Hr1G032720InterPro:DUF868_plnPANTHER:PTHR31972PANTHER:PTHR31972:SF2
PFAM:PF05910SEG:segUniParc:UPI0002008DC7UniProt:F2EIM1MapMan:35.2:
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EIM1]
Coordinates
chrchr6H:-:144062012..144065089
Molecular Weight (calculated)
34503.6 Da
IEP (calculated)
7.539
GRAVY (calculated)
-0.330
Length
315 amino acids
Sequence
(BLAST)
001: MHKRSKSCEP SRDEQRGGVH GATASDDSIT GKVASSSSAT AQCYAMTVYL VRINGAQRLV TAVWNKSIIN QSFTITIDRH GDGASSCGGG DDGTLSLKVE
101: LKPWPFWSKK GLKSFFLDGH RLDIFWDLRS AKFPASSPEP ASGYFVALVS QEQVVLTLGD LKKDAYKRSK CRPSLEDAVP LCRRESVFGR RSFVARAWLN
201: ASKKDHDIVI EASLAGPREP EMAITVDGRA LVQVKNLQWK FRGNETVLVN QSPVQVLWDV HDWIFAGPGS QAVFAFKPGA PPEVDSDDAA ELDNGSGIPA
301: DPADYSFFLH AWKTD
Best Arabidopsis Sequence Match ( AT2G04220.1 )
(BLAST)
001: MSFRSHSRGS SQFAEKVTED PVTYKTAQST VTCIYQAHIS GFWRNVTVLW SKNLMNHSLM VMVTNVEGDM NYCCKVDLKP WHFWNKKGYK SFDVEGNPVE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE
Arabidopsis Description
DUF868 family protein (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SI11]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.