Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G066800.6 | |
| HORVU5Hr1G094660.1 | |
| HORVU6Hr1G036020.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04860.1 | HORVU5Hr1G094660.1 | AT1G05410.1 | 21798944 |
| AT3G04860.1 | HORVU6Hr1G036020.1 | AT4G32190.1 | 21798944 |
| AT5G28150.1 | HORVU3Hr1G066800.6 | AT4G26100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G223900.1 | Wheat | plastid | 91.07 | 90.11 |
| TraesCS2D01G204300.1 | Wheat | plastid | 90.71 | 89.75 |
| TraesCS2A01G196200.1 | Wheat | plastid | 88.57 | 87.63 |
| Os07t0572300-01 | Rice | plastid | 79.29 | 78.17 |
| Zm00001d021869_P001 | Maize | plastid | 70.0 | 69.01 |
| OQU90135 | Sorghum | plastid | 74.64 | 61.47 |
| GSMUA_Achr7P07540_001 | Banana | endoplasmic reticulum, nucleus, peroxisome, plastid | 52.5 | 56.32 |
| HORVU5Hr1G109570.1 | Barley | cytosol, plastid | 58.57 | 56.16 |
| GSMUA_Achr7P01840_001 | Banana | cytosol, peroxisome, plastid | 52.5 | 55.68 |
| GSMUA_Achr5P24690_001 | Banana | cytosol | 56.79 | 54.83 |
| VIT_14s0030g01760.t01 | Wine grape | cytosol, plastid | 54.64 | 53.68 |
| VIT_07s0151g00930.t01 | Wine grape | cytosol, plastid | 56.07 | 52.33 |
| Solyc01g097790.2.1 | Tomato | cytosol | 55.36 | 51.84 |
| PGSC0003DMT400057872 | Potato | cytosol | 55.36 | 51.84 |
| KRH71412 | Soybean | cytosol | 55.36 | 51.49 |
| KRH32026 | Soybean | cytosol, plastid | 55.0 | 51.33 |
| VIT_05s0020g03340.t01 | Wine grape | cytosol | 54.29 | 50.67 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 51.79 | 50.17 |
| AT3G04860.1 | Thale cress | plastid | 51.79 | 50.17 |
| CDY52485 | Canola | plastid | 52.5 | 50.17 |
| KRH68710 | Soybean | plastid | 52.86 | 49.83 |
| Bra009991.1-P | Field mustard | plastid | 52.14 | 49.83 |
| CDX86191 | Canola | plastid | 52.14 | 49.83 |
| KRG92651 | Soybean | cytosol | 53.21 | 49.67 |
| Bra040118.1-P | Field mustard | plastid | 49.64 | 49.29 |
| KRH34070 | Soybean | cytosol, endoplasmic reticulum, nucleus | 52.86 | 49.17 |
| KRG96949 | Soybean | cytosol, plastid | 53.57 | 49.02 |
| CDY21108 | Canola | plastid | 49.29 | 48.94 |
| KRG95548 | Soybean | cytosol | 52.5 | 48.84 |
| CDY00013 | Canola | cytosol, plastid | 51.43 | 48.81 |
| CDY72112 | Canola | cytosol, peroxisome, plastid | 48.57 | 48.23 |
| CDY30020 | Canola | cytosol, plastid | 48.57 | 48.23 |
| CDY50761 | Canola | cytosol, peroxisome, plastid | 48.57 | 47.39 |
| Bra040410.1-P | Field mustard | cytosol, nucleus, peroxisome | 47.14 | 46.15 |
| PGSC0003DMT400077341 | Potato | cytosol, peroxisome, plasma membrane | 48.57 | 44.88 |
| KRH67230 | Soybean | cytosol | 49.64 | 44.41 |
| Solyc09g075960.1.1 | Tomato | nucleus, peroxisome, plasma membrane | 47.86 | 44.22 |
| Bra036119.1-P | Field mustard | mitochondrion | 52.14 | 38.22 |
| CDY59819 | Canola | cytosol, mitochondrion, plasma membrane | 52.14 | 32.88 |
| HORVU3Hr1G092470.1 | Barley | plastid | 35.71 | 31.75 |
| HORVU6Hr1G032720.1 | Barley | cytosol | 34.29 | 30.48 |
| HORVU5Hr1G041450.1 | Barley | plastid | 30.0 | 26.09 |
| HORVU7Hr1G058790.3 | Barley | plastid | 26.07 | 24.09 |
| HORVU4Hr1G001870.2 | Barley | cytosol | 26.07 | 21.22 |
| HORVU5Hr1G065520.1 | Barley | plastid | 30.71 | 19.03 |
| HORVU7Hr1G029920.1 | Barley | mitochondrion | 25.0 | 17.59 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G038060.1 | EnsemblPlantsGene:HORVU2Hr1G038060 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF15 | PFAM:PF05910 |
| UniParc:UPI0002953417 | UniProt:M0V4B3 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:176335815..176337734
Molecular Weight (calculated)
31299.7 Da
IEP (calculated)
9.681
GRAVY (calculated)
-0.226
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDLASCLSQ SGVQVARPSS SSAKTMVQCA YQARLRGKSC RVTVTWSKAA MGQALAVAIH DSSGRFLCKT EIKPWLFSKR KGSKSMEVDG GTLDVLWDLS
101: SAKFVGGPEP LEGYYVALIF DLEAVLVLGD MYHKVSSNAL PSDAVMIARK EHTYGKKVYC TKARFSDIDQ HHNITIECDT SGTKDPSLEI RVGKKRVLQV
201: KRLAWKFRGN QTFYVDGLPV EVLWDVHDWL FGSSNGCAVF LFQSGRSMQK FLSRPSSQDE KERQVGRFGF TLILHAWKVE
101: SAKFVGGPEP LEGYYVALIF DLEAVLVLGD MYHKVSSNAL PSDAVMIARK EHTYGKKVYC TKARFSDIDQ HHNITIECDT SGTKDPSLEI RVGKKRVLQV
201: KRLAWKFRGN QTFYVDGLPV EVLWDVHDWL FGSSNGCAVF LFQSGRSMQK FLSRPSSQDE KERQVGRFGF TLILHAWKVE
001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
Arabidopsis Description
At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.