Factsheet for PGSC0003DMT400077341

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075960.1.1	Tomato	nucleus, peroxisome, plasma membrane	97.36	97.36
VIT_05s0020g03340.t01	Wine grape	cytosol	67.0	67.67
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	55.45	64.37
KRG95548	Soybean	cytosol	63.37	63.79
KRH32026	Soybean	cytosol, plastid	63.04	63.67
PGSC0003DMT400057872	Potato	cytosol	61.72	62.54
KRH71412	Soybean	cytosol	62.05	62.46
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	54.13	62.12
GSMUA_Achr5P24690_001	Banana	cytosol	57.76	60.34
KRH67230	Soybean	cytosol	61.39	59.42
EER93250	Sorghum	cytosol, plastid	56.44	58.76
Zm00001d013042_P001	Maize	plastid	56.44	58.76
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	55.78	58.08
HORVU5Hr1G109570.1	Barley	cytosol, plastid	55.12	57.19
Zm00001d034527_P001	Maize	plastid	55.45	57.14
TraesCS5A01G456500.1	Wheat	plastid	54.46	56.51
TraesCS5D01G467300.1	Wheat	cytosol, plastid	53.8	52.92
Os07t0572300-01	Rice	plastid	49.51	52.82
HORVU2Hr1G038060.1	Barley	plastid	44.88	48.57
TraesCS5B01G465500.1	Wheat	plastid	53.8	48.51
TraesCS2D01G204300.1	Wheat	plastid	44.88	48.06
TraesCS2B01G223900.1	Wheat	plastid	44.55	47.7
TraesCS2A01G196200.1	Wheat	plastid	44.55	47.7
Zm00001d021869_P001	Maize	plastid	43.89	46.83
OQU90135	Sorghum	plastid	45.54	40.59
PGSC0003DMT400006889	Potato	nucleus	18.81	37.25
PGSC0003DMT400018411	Potato	cytosol	36.96	36.96
PGSC0003DMT400046694	Potato	cytosol	37.62	35.74
PGSC0003DMT400069001	Potato	plastid	34.98	34.42
PGSC0003DMT400006698	Potato	mitochondrion	33.99	33.44
PGSC0003DMT400076600	Potato	cytosol	31.35	31.88
PGSC0003DMT400068894	Potato	plastid	36.63	31.81
PGSC0003DMT400089872	Potato	cytosol, peroxisome, plastid	32.01	27.95

Protein Annotations

EnsemblPlants:PGSC0003DMT400077341	EnsemblPlantsGene:PGSC0003DMG400030081	EntrezGene:102583145	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF4
PFAM:PF05910	PGSC:PGSC0003DMG400030081	RefSeq:XP_006360806.1	UniParc:UPI0002956675	UniProt:M1CY89	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030081]

Coordinates

chr9:-:53575320..53576605

Molecular Weight (calculated)

33867.9 Da

IEP (calculated)

8.074

GRAVY (calculated)

0.022

Length

303 amino acids

Sequence
(BLAST)

001: MRDFPSCFGE NGVQVADASC SSVVGVSKTP QNLVTCVYQC KLLGKSCLIT VVWTKSLMGQ CLSVEIDDMS HQCLCKVDVK PSLFSKRKGS RSLEVNACKI
101: DIHWDFSLAK FGSGPEPVEG YYLAVVCKGQ MVLAIGDLRK EAFKKSNATP SLSNAIFISK REHIFGKRVF GTKAQFCYTG PIHDITIECD SSVIDDPCLL
201: VRIDSKTVMQ VKHLRWKFRG NYTVLIDGLP VEVFWDVHNW LFSSNFGNAV FMFQTCLSSE KLWNTQTLSD LSVMPWPYTE STLSNSKSPG LGFSLVLYVW
301: KND

Best Arabidopsis Sequence Match ( AT5G28150.1 )
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE

Arabidopsis Description

At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.