Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 4
- cytosol 2
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04860.1 | EER90880 | AT1G05410.1 | 21798944 |
| AT3G04860.1 | EES06399 | AT4G32190.1 | 21798944 |
| AT5G28150.1 | EES01354 | AT4G26100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013042_P001 | Maize | plastid | 96.56 | 96.56 |
| Zm00001d034527_P001 | Maize | plastid | 94.16 | 93.2 |
| Os03t0806700-01 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 93.13 | 93.13 |
| TraesCS5A01G456500.1 | Wheat | plastid | 90.03 | 89.73 |
| HORVU5Hr1G109570.1 | Barley | cytosol, plastid | 90.03 | 89.73 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 89.0 | 84.09 |
| TraesCS5B01G465500.1 | Wheat | plastid | 89.35 | 77.38 |
| GSMUA_Achr7P07540_001 | Banana | endoplasmic reticulum, nucleus, peroxisome, plastid | 67.01 | 74.71 |
| GSMUA_Achr5P24690_001 | Banana | cytosol | 73.2 | 73.45 |
| GSMUA_Achr7P01840_001 | Banana | cytosol, peroxisome, plastid | 64.95 | 71.59 |
| KRH71412 | Soybean | cytosol | 66.32 | 64.12 |
| KRH32026 | Soybean | cytosol, plastid | 65.64 | 63.67 |
| VIT_07s0151g00930.t01 | Wine grape | cytosol, plastid | 65.64 | 63.67 |
| Solyc01g097790.2.1 | Tomato | cytosol | 64.95 | 63.21 |
| VIT_14s0030g01760.t01 | Wine grape | cytosol, plastid | 61.86 | 63.16 |
| PGSC0003DMT400057872 | Potato | cytosol | 64.6 | 62.88 |
| KRG95548 | Soybean | cytosol | 64.6 | 62.46 |
| VIT_05s0020g03340.t01 | Wine grape | cytosol | 64.26 | 62.33 |
| KRG92651 | Soybean | cytosol | 62.54 | 60.67 |
| KRH68710 | Soybean | plastid | 61.51 | 60.27 |
| KRH34070 | Soybean | cytosol, endoplasmic reticulum, nucleus | 62.2 | 60.13 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 58.08 | 58.48 |
| KRG96949 | Soybean | cytosol, plastid | 61.17 | 58.17 |
| KRH67230 | Soybean | cytosol | 62.54 | 58.15 |
| AT3G04860.1 | Thale cress | plastid | 57.73 | 58.13 |
| CDY52485 | Canola | plastid | 58.08 | 57.68 |
| CDX86191 | Canola | plastid | 58.08 | 57.68 |
| Bra009991.1-P | Field mustard | plastid | 58.08 | 57.68 |
| CDY00013 | Canola | cytosol, plastid | 57.39 | 56.61 |
| PGSC0003DMT400077341 | Potato | cytosol, peroxisome, plasma membrane | 58.76 | 56.44 |
| Solyc09g075960.1.1 | Tomato | nucleus, peroxisome, plasma membrane | 58.42 | 56.11 |
| Bra040410.1-P | Field mustard | cytosol, nucleus, peroxisome | 53.95 | 54.9 |
| CDY50761 | Canola | cytosol, peroxisome, plastid | 53.95 | 54.7 |
| CDY72112 | Canola | cytosol, peroxisome, plastid | 52.92 | 54.61 |
| CDY21108 | Canola | plastid | 51.89 | 53.55 |
| CDY30020 | Canola | cytosol, plastid | 51.89 | 53.55 |
| Bra040118.1-P | Field mustard | plastid | 51.2 | 52.84 |
| OQU90135 | Sorghum | plastid | 56.01 | 47.94 |
| Bra036119.1-P | Field mustard | mitochondrion | 57.39 | 43.72 |
| CDY59819 | Canola | cytosol, mitochondrion, plasma membrane | 57.39 | 37.61 |
| OQU84582 | Sorghum | cytosol | 37.46 | 33.96 |
| EES04078 | Sorghum | plastid | 36.43 | 32.72 |
| OQU82880 | Sorghum | plastid | 28.87 | 25.53 |
| KXG26216 | Sorghum | cytosol | 31.96 | 24.93 |
| KXG22966 | Sorghum | plastid | 27.84 | 24.77 |
| KXG21057 | Sorghum | mitochondrion | 31.96 | 24.28 |
| EES13906 | Sorghum | plastid | 29.55 | 20.57 |
| EER87970 | Sorghum | plastid | 24.4 | 19.78 |
| KXG35635 | Sorghum | plastid | 29.55 | 19.28 |
Protein Annotations
| EnsemblPlants:EER93250 | EnsemblPlantsGene:SORBI_3001G047900 | EntrezGene:8081212 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF4 |
| PFAM:PF05910 | ProteinID:EER93250 | ProteinID:EER93250.1 | RefSeq:XP_002466252.1 | SEG:seg | unigene:Sbi.21438 |
| UniParc:UPI0001A82A77 | UniProt:C5WW62 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:3515258..3518641
Molecular Weight (calculated)
32193.7 Da
IEP (calculated)
8.141
GRAVY (calculated)
-0.077
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDFPSCFGE SGVQIADASS SSSSAGKGAA QNLVTCLYQT QFSGRPCVIS LTWSKSLMGQ GLSIGVDDLS GHCLCKADIK PWLFSKKKGS KSLDVEDGKI
101: DIFWDLSGAK FGAGPEPVEG FYVAVVFDLE LVLLLGDMKK DAYRKTGANR SMLNAAFVAR KEHIYGKKIY SAKAQFCNNG QFHDIAIECD TVGLKDPCLE
201: IRVDKKPVMQ VKRLAWKFRG NQTILVDGLP VEVFWDVHSW LFGSTTSNAV FMFQTCQAPE KSLPWSYSQI FRESQLQGLG FSLILHAWKV E
101: DIFWDLSGAK FGAGPEPVEG FYVAVVFDLE LVLLLGDMKK DAYRKTGANR SMLNAAFVAR KEHIYGKKIY SAKAQFCNNG QFHDIAIECD TVGLKDPCLE
201: IRVDKKPVMQ VKRLAWKFRG NQTILVDGLP VEVFWDVHSW LFGSTTSNAV FMFQTCQAPE KSLPWSYSQI FRESQLQGLG FSLILHAWKV E
001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
Arabidopsis Description
At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.