Factsheet for TraesCS5D01G467300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, endoplasmic reticulum, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G251600.2
TraesCS3B01G281100.2
TraesCS3D01G252000.2
TraesCS5A01G385300.3
TraesCS5B01G390300.3
TraesCS5D01G395300.2
TraesCS6A01G180500.1
TraesCS6D01G164600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04860.1	TraesCS5A01G385300.3	AT1G05410.1	21798944
AT3G04860.1	TraesCS5B01G390300.3	AT1G05410.1	21798944
AT3G04860.1	TraesCS5D01G395300.2	AT1G05410.1	21798944
AT3G04860.1	TraesCS6A01G180500.1	AT4G32190.1	21798944
AT3G04860.1	TraesCS6D01G164600.1	AT4G32190.1	21798944
AT5G28150.1	TraesCS3A01G251600.2	AT4G26100.1	21798944
AT5G28150.1	TraesCS3B01G281100.2	AT4G26100.1	21798944
AT5G28150.1	TraesCS3D01G252000.2	AT4G26100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G456500.1	Wheat	plastid	91.88	96.92
HORVU5Hr1G109570.1	Barley	cytosol, plastid	91.56	96.58
EER93250	Sorghum	cytosol, plastid	84.09	89.0
TraesCS5B01G465500.1	Wheat	plastid	96.75	88.69
Zm00001d013042_P001	Maize	plastid	83.12	87.97
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	83.12	87.97
Zm00001d034527_P001	Maize	plastid	82.14	86.05
GSMUA_Achr5P24690_001	Banana	cytosol	69.16	73.45
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	61.04	72.03
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	60.06	70.08
Solyc01g097790.2.1	Tomato	cytosol	61.04	62.88
VIT_07s0151g00930.t01	Wine grape	cytosol, plastid	61.04	62.67
PGSC0003DMT400057872	Potato	cytosol	60.71	62.54
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	57.79	62.46
KRH71412	Soybean	cytosol	60.71	62.13
VIT_05s0020g03340.t01	Wine grape	cytosol	60.39	62.0
KRH32026	Soybean	cytosol, plastid	60.39	62.0
KRG95548	Soybean	cytosol	59.09	60.47
KRG92651	Soybean	cytosol	58.77	60.33
KRH68710	Soybean	plastid	58.12	60.27
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	58.44	59.8
KRG96949	Soybean	cytosol, plastid	57.79	58.17
TraesCS2D01G204300.1	Wheat	plastid	53.25	57.95
AT5G28150.1	Thale cress	cytosol, plastid	53.9	57.44
AT3G04860.1	Thale cress	plastid	53.57	57.09
CDY52485	Canola	plastid	53.57	56.31
Bra009991.1-P	Field mustard	plastid	53.57	56.31
CDX86191	Canola	plastid	53.57	56.31
KRH67230	Soybean	cytosol	56.82	55.91
CDY00013	Canola	cytosol, plastid	52.6	54.92
PGSC0003DMT400077341	Potato	cytosol, peroxisome, plasma membrane	52.92	53.8
Solyc09g075960.1.1	Tomato	nucleus, peroxisome, plasma membrane	52.92	53.8
CDY30020	Canola	cytosol, plastid	48.38	52.84
CDY21108	Canola	plastid	48.38	52.84
CDY72112	Canola	cytosol, peroxisome, plastid	48.05	52.48
Bra040410.1-P	Field mustard	cytosol, nucleus, peroxisome	48.7	52.45
CDY50761	Canola	cytosol, peroxisome, plastid	48.7	52.26
Bra040118.1-P	Field mustard	plastid	47.73	52.13
Bra036119.1-P	Field mustard	mitochondrion	52.6	42.41
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	52.6	36.49
TraesCS3D01G411600.1	Wheat	plastid	36.04	34.26
TraesCS1D01G026300.1	Wheat	cytosol	30.84	31.25
TraesCS2D01G290200.1	Wheat	cytosol	32.47	30.12
TraesCS6D01G150500.1	Wheat	nucleus	30.52	30.03
TraesCS7D01G277700.1	Wheat	plastid	27.92	28.48
TraesCS5D01G137700.1	Wheat	plastid	28.25	27.1
TraesCS4D01G010300.1	Wheat	cytosol	27.27	23.93
TraesCS4D01G129600.1	Wheat	plastid	23.38	22.64
TraesCS5D01G233300.1	Wheat	plastid	28.25	21.01
TraesCS7D01G147500.1	Wheat	plastid	23.38	18.32

Protein Annotations

EnsemblPlants:TraesCS5D01G467300.1	EnsemblPlantsGene:TraesCS5D01G467300	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF4	PFAM:PF05910
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:509425185..509426765

Molecular Weight (calculated)

34032.1 Da

IEP (calculated)

8.552

GRAVY (calculated)

-0.039

Length

308 amino acids

Sequence
(BLAST)

001: MRDFPSCFGE SGVQIADAAS SSSSAGKGAA QNLVTCLYQT QLAGRPCVVS VTWSKSLMGQ GLSVAVDALS GQSLCKADIK PWLFSKKKGS KTLDADGAKV
101: DIFWDLSAAR FGAGPEPLEG FYVALLFDLE LALLLGDMKK DAYRKTGANR PALNAAFVAR KEHIYGKKIY SAKAQFCDNG QFHDLVIECD TVGLKDPCLE
201: MRIDKKPVMQ VKRLAWKFRG NQTILVDGLP VEVFWDVHSW LFGPTTTSNA VFMFQTCQAP EKSMPWSYSQ IFRESQLQGL GFSLILHAWK IERQIILLRI
301: MESSATTY

Best Arabidopsis Sequence Match ( AT5G28150.1 )
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE

Arabidopsis Description

At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.