CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82685
CDX94377
CDY69293

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28150.1	CDX82685	AT4G26100.1	21798944
AT5G28150.1	CDX94377	AT4G26100.1	21798944
AT5G28150.1	CDY69293	AT4G26100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009991.1-P	Field mustard	plastid	100.0	100.0
CDY52485	Canola	plastid	97.95	97.95
AT5G28150.1	Thale cress	cytosol, plastid	90.44	91.7
CDY00013	Canola	cytosol, plastid	92.15	91.53
CDY50761	Canola	cytosol, peroxisome, plastid	76.79	78.4
CDY72112	Canola	cytosol, peroxisome, plastid	74.06	76.95
CDY21108	Canola	plastid	72.35	75.18
CDY30020	Canola	cytosol, plastid	70.99	73.76
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	67.58	69.47
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	68.94	67.11
KRG92651	Soybean	cytosol	68.26	66.67
KRH68710	Soybean	plastid	66.55	65.66
KRG96949	Soybean	cytosol, plastid	67.92	65.03
PGSC0003DMT400057872	Potato	cytosol	63.82	62.54
Solyc01g097790.2.1	Tomato	cytosol	63.82	62.54
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	54.61	61.3
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	54.95	60.98
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	92.15	60.81
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	58.36	58.76
Zm00001d013042_P001	Maize	plastid	57.68	58.08
EER93250	Sorghum	cytosol, plastid	57.68	58.08
GSMUA_Achr5P24690_001	Banana	cytosol	57.34	57.93
HORVU5Hr1G109570.1	Barley	cytosol, plastid	56.66	56.85
TraesCS5A01G456500.1	Wheat	plastid	56.31	56.51
Zm00001d034527_P001	Maize	plastid	55.97	55.78
TraesCS5D01G467300.1	Wheat	cytosol, plastid	56.31	53.57
Os07t0572300-01	Rice	plastid	51.88	53.52
HORVU2Hr1G038060.1	Barley	plastid	49.83	52.14
TraesCS2D01G204300.1	Wheat	plastid	48.46	50.18
TraesCS2B01G223900.1	Wheat	plastid	48.46	50.18
TraesCS5B01G465500.1	Wheat	plastid	56.66	49.4
TraesCS2A01G196200.1	Wheat	plastid	46.76	48.41
Zm00001d021869_P001	Maize	plastid	46.42	47.89
OQU90135	Sorghum	plastid	48.46	41.76
CDY00849	Canola	nucleus	38.57	38.83
CDY27882	Canola	nucleus	38.57	38.83
CDX86317	Canola	plastid	34.81	33.22
CDY48744	Canola	mitochondrion, plastid	34.47	33.22
CDY19961	Canola	plastid	34.47	33.01
CDY05690	Canola	mitochondrion, plastid	33.79	33.0
CDX77134	Canola	cytosol, plastid	36.18	32.82
CDY00069	Canola	plastid	34.47	32.79
CDX85324	Canola	plastid	31.06	32.73
CDY30531	Canola	plastid	34.81	31.1
CDY66553	Canola	cytosol	29.35	30.5
CDX82547	Canola	cytosol	29.35	29.55
CDY51100	Canola	cytosol	31.06	26.76
CDX69793	Canola	nucleus	33.79	26.33
CDX85733	Canola	cytosol, nucleus, plastid	30.72	26.24
CDX97072	Canola	nucleus	33.79	25.58
CDX79683	Canola	cytosol	27.3	25.24
CDX84556	Canola	cytosol	27.3	24.92
CDX76763	Canola	plastid	26.62	22.35
CDY56275	Canola	cytosol	11.26	21.57
CDY33155	Canola	cytosol	25.6	18.75

Protein Annotations

EnsemblPlants:CDX86191	EnsemblPlantsGene:GSBRNA2T00144268001	InterPro:DUF868_pln	ncoils:Coil	PANTHER:PTHR31972	PANTHER:PTHR31972:SF40
PFAM:PF05910	ProteinID:CDX86191	ProteinID:CDX86191.1	SEG:seg	UniParc:UPI000253EE53	MapMan:35.2

Description

BnaA06g29080D

Coordinates

chrLK031845:+:265855..267144

Molecular Weight (calculated)

32226.7 Da

IEP (calculated)

8.888

GRAVY (calculated)

-0.062

Length

293 amino acids

Sequence
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SNSGKNAQNL VACIYQCRIR GRSCLITVTW AKSLMGQSVT VGVDDSCNNQ SLCKVEIKPW LFTKRKGSKS LEAYSCKIDV
101: FWDLSSAKFG SGPEALGGFY VSVVVDKEMV LLLGDMRKEA FKKTNASPSS SLGAVFVAKK EHVFGKRAFA TKAELCADGK IHDVVIECDT SVTDPCLVVR
201: VDGKTLLQVK RLKWKFRGND TIVVNRMAVE VLWDVHSWLF GMPSAGNAVF MFRTCQSSSE KSLSFSQDVM ATTTNSKSQS FGFSLILYAW KNE

Best Arabidopsis Sequence Match ( AT5G28150.1 )
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE

Arabidopsis Description

At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.