CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 1
plasma membrane 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68825
CDX75227
CDX81487
CDX81488
CDX81489
CDX93183
CDY10107
CDY47288
CDY52927
CDY61790
CDY61791

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04860.1	CDY10107	AT1G05410.1	21798944
AT3G04860.1	CDY47288	AT1G05410.1	21798944
AT3G04860.1	CDX93183	AT2G19650.1	21798944
AT3G04860.1	CDY52927	AT2G19650.1	21798944
AT3G04860.1	CDX68825	AT4G32190.1	21798944
AT3G04860.1	CDX75227	AT4G32190.1	21798944
AT3G04860.1	CDX81487	AT4G32190.1	21798944
AT3G04860.1	CDX81488	AT4G32190.1	21798944
AT3G04860.1	CDX81489	AT4G32190.1	21798944
AT3G04860.1	CDY61790	AT4G32190.1	21798944
AT3G04860.1	CDY61791	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21108	Canola	plastid	94.33	94.33
Bra040118.1-P	Field mustard	plastid	93.97	93.97
AT3G04860.1	Thale cress	plastid	83.33	81.31
CDY50761	Canola	cytosol, peroxisome, plastid	77.31	75.96
CDY72112	Canola	cytosol, peroxisome, plastid	75.18	75.18
CDY52485	Canola	plastid	73.76	70.99
CDX86191	Canola	plastid	73.76	70.99
CDY00013	Canola	cytosol, plastid	73.05	69.83
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	61.35	60.7
Solyc01g097790.2.1	Tomato	cytosol	61.35	57.86
PGSC0003DMT400057872	Potato	cytosol	60.64	57.19
KRG92651	Soybean	cytosol	59.93	56.33
KRG96949	Soybean	cytosol, plastid	60.99	56.21
KRH68710	Soybean	plastid	58.87	55.89
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	59.57	55.81
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	48.58	52.49
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	48.94	52.27
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	53.9	52.23
EER93250	Sorghum	cytosol, plastid	53.55	51.89
Zm00001d013042_P001	Maize	plastid	52.84	51.2
GSMUA_Achr5P24690_001	Banana	cytosol	51.77	50.34
HORVU5Hr1G109570.1	Barley	cytosol, plastid	52.13	50.34
Os07t0572300-01	Rice	plastid	50.35	50.0
TraesCS5A01G456500.1	Wheat	plastid	51.77	50.0
Zm00001d034527_P001	Maize	plastid	51.42	49.32
TraesCS2D01G204300.1	Wheat	plastid	48.94	48.76
HORVU2Hr1G038060.1	Barley	plastid	48.23	48.57
TraesCS5D01G467300.1	Wheat	cytosol, plastid	52.84	48.38
TraesCS2B01G223900.1	Wheat	plastid	47.87	47.7
TraesCS2A01G196200.1	Wheat	plastid	47.16	47.0
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	73.76	46.85
Zm00001d021869_P001	Maize	plastid	45.39	45.07
TraesCS5B01G465500.1	Wheat	plastid	52.84	44.35
OQU90135	Sorghum	plastid	47.52	39.41
CDY27882	Canola	nucleus	39.01	37.8
CDY00849	Canola	nucleus	39.01	37.8
CDX77134	Canola	cytosol, plastid	38.3	33.44
CDX85324	Canola	plastid	31.91	32.37
CDY48744	Canola	mitochondrion, plastid	34.75	32.24
CDY05690	Canola	mitochondrion, plastid	34.04	32.0
CDX86317	Canola	plastid	34.75	31.92
CDY30531	Canola	plastid	36.52	31.4
CDY19961	Canola	plastid	34.04	31.37
CDY00069	Canola	plastid	34.04	31.17
CDY66553	Canola	cytosol	30.14	30.14
CDX82547	Canola	cytosol	30.14	29.21
CDY51100	Canola	cytosol	30.85	25.59
CDX79683	Canola	cytosol	28.72	25.55
CDX85733	Canola	cytosol, nucleus, plastid	30.85	25.36
CDX84556	Canola	cytosol	28.72	25.23
CDX69793	Canola	nucleus	32.27	24.2
CDX97072	Canola	nucleus	32.27	23.51
CDX76763	Canola	plastid	25.18	20.34
CDY56275	Canola	cytosol	10.64	19.61
CDY33155	Canola	cytosol	27.3	19.25

Protein Annotations

EnsemblPlants:CDY30020	EnsemblPlantsGene:GSBRNA2T00044555001	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF40	PFAM:PF05910
ProteinID:CDY30020	ProteinID:CDY30020.1	UniParc:UPI0004EEB974	UniProt:A0A078GU82	MapMan:35.2	:

Description

BnaC01g39880DBnaC01g39880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU82]

Coordinates

chrLK032247:-:469181..470029

Molecular Weight (calculated)

31687.1 Da

IEP (calculated)

8.668

GRAVY (calculated)

-0.075

Length

282 amino acids

Sequence
(BLAST)

001: MRNFTSCSSE NGVQVTDPST SNAVKVSQNL VVCIYRCCIR GRTCLITVTW TKTLMGQCVT IGVDDSCNRS LCKFEIKPWL FTKRKGYKNL EACDIYWDLS
101: SAKFGSSPEP LCGFYVSVLV DTEMVLLLGD MKKEAFKKTN AASSLSAVFI AKKEHVFGKR TFATKAQFSG DGETHDLVVE CDTSISDPCL IVSVDGKTLM
201: EVKRLRWKFR GNETIVVNRV SVEVLWDVHS WFFGVPSSPG NGVFMFRTRQ AVEKTWSSTQ VPTSLRPQSF GFTLFLYAWK NE

Best Arabidopsis Sequence Match ( AT3G04860.1 )
(BLAST)

001: MRDFPSCSGE NGVQIADSSS SSSAGRNAQN LVICIYRCRI RGRTCLITVT WTKNLMGQCV TVGVDDSCNR SLCKVEIKPW LFTKRKGSKT LEAYACNIDV
101: FWDLSSAKFG SSPEPLGGFY VGVVVDKEMV LLLGDMKKEA FKKTNAAPSS SLGAVFIAKK EHVFGKRTFA TKAQFSGDGK THDLVIECDT SLSDPCLIVR
201: VDGKILMQVQ RLHWKFRGND TIIVNRISVE VLWDVHSWFF GLPSSPGNAV FMFRTCQSVE KTWSFTQVPT SSKSQSFGFS LILYAWKNE

Arabidopsis Description

AT3g04860/T9J14_19 [Source:UniProtKB/TrEMBL;Acc:Q9CAV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.