Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 5
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 5
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81489 | Canola | nucleus | 37.57 | 89.87 |
| CDY02356 | Canola | cytosol | 19.31 | 44.24 |
| Bra011328.1-P | Field mustard | plastid | 83.33 | 41.83 |
| CDX75227 | Canola | plastid | 82.28 | 41.3 |
| CDX68825 | Canola | plastid | 80.95 | 40.64 |
| AT4G32190.1 | Thale cress | plastid | 58.2 | 28.1 |
| CDY35289 | Canola | nucleus | 20.11 | 20.32 |
| VIT_04s0008g05610.t01 | Wine grape | plastid | 40.48 | 19.77 |
| CDX81488 | Canola | cytosol, nucleus, plastid | 7.67 | 18.95 |
| PGSC0003DMT400010993 | Potato | plastid | 37.83 | 18.57 |
| Solyc08g022030.2.1 | Tomato | nucleus | 36.77 | 18.05 |
| KRH15859 | Soybean | endoplasmic reticulum, vacuole | 33.6 | 17.69 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 10.58 | 17.62 |
| KRH05183 | Soybean | plastid | 35.19 | 17.41 |
| Zm00001d053726_P001 | Maize | plastid | 29.1 | 14.27 |
| EES06399 | Sorghum | plastid | 28.57 | 13.95 |
| Os02t0186400-01 | Rice | plastid | 27.78 | 13.76 |
| HORVU6Hr1G036020.1 | Barley | plastid | 26.45 | 12.92 |
| TraesCS6A01G180500.1 | Wheat | plastid | 26.19 | 12.81 |
| TraesCS6D01G164600.1 | Wheat | plastid | 25.93 | 12.68 |
| CDX95298 | Canola | nucleus | 12.17 | 4.63 |
| CDY61791 | Canola | nucleus | 1.32 | 3.23 |
| CDX81487 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY61790 | EnsemblPlantsGene:GSBRNA2T00034363001 | ncoils:Coil | PANTHER:PTHR23160 | PANTHER:PTHR23160:SF11 | ProteinID:CDY61790 |
| ProteinID:CDY61790.1 | SEG:seg | UniParc:UPI0004EDD57A | UniProt:A0A078JBI2 | MapMan:35.2 | : |
Description
BnaC02g46080DBnaC02g46080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBI2]
Coordinates
chrLK034039:+:10154..11819
Molecular Weight (calculated)
43403.1 Da
IEP (calculated)
8.179
GRAVY (calculated)
-0.610
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGILGLLVQ GVVAAKVSTL LLPYSYALFG FLPPFIKNQA IRLNLSSYSS LSPCQTSVNQ KQKTLVTFLT RCRKGKRRSL LTVQSVLNNT RPSFNDNGTA
101: EEPSKILLDK LFARTHKQTN ENSVYPPDEA LSYSSLGGLE SDLQAALMAL LKREEDSQDA ERKVLSEKKK LNRAKEGLEK RERVILQASL KHESLQEELK
201: RANVELASQA REIEELKHKL RERDEELVAI QASLTFKERE LDRMRVEISI KTKEISVASF EFENMSQLLR QAKEIVERQE DEIEALQRAL KEKEEELDIA
301: TAEKRLEQEK LRETEANLKK QTEEWLVAQE EVSKLQEETV KRLGEANKTM EDFKRVRKLL TDVRFELVSS REALLSSR
101: EEPSKILLDK LFARTHKQTN ENSVYPPDEA LSYSSLGGLE SDLQAALMAL LKREEDSQDA ERKVLSEKKK LNRAKEGLEK RERVILQASL KHESLQEELK
201: RANVELASQA REIEELKHKL RERDEELVAI QASLTFKERE LDRMRVEISI KTKEISVASF EFENMSQLLR QAKEIVERQE DEIEALQRAL KEKEEELDIA
301: TAEKRLEQEK LRETEANLKK QTEEWLVAQE EVSKLQEETV KRLGEANKTM EDFKRVRKLL TDVRFELVSS REALLSSR
001: MGFSQAIRLN LASFSSPSPC DYCLTRVVNH KQKSLVAFPS ITRRKRHLLL SVQSVLHNTR PNINDNGSAE SANVLFDKLF ARTHRLERQT NQHSVYPDDD
101: DLPYSNLGVL ESDLEAALVA LLKREEDLHD AERKLLSDKN KLNRAKEELE KREKTISEAS LKHESLQEEL KRANVELASQ AREIEELKHK LRERDEERAA
201: LQSSLTLKEE ELEKMRQEIA NRSKEVSMAI SEFESKSQLL SKANEVVKRQ EGEIYALQRA LEEKEEELEI SKATKKLEQE KLRETEANLK KQTEEWLIAQ
301: DEVNKLKEET VKRLGEANET MEDFMKVKKL LTDVRFELIS SREALVFSRE QMEEKELLLE KQLEELEEQR KSVLSYMQSL RDAHTEVESE RVKLRVVEAK
401: NFALEREISV QKELLEDLRE ELQKEKPLLE LAMHDISVIQ DELYKKANAF QVSQNLLQEK ESSLVEAKLE IQHLKSEQAS LELLLQEKDE ELAEARNKLG
501: EVNQEVTELK ALMISREDQL MEATEMLKEK DVHLHRIEGE LGSSKLKVTE AEMVVERIAE LTNRLLMSTT NGQNQNAMRI NNEISIDSMQ QPLEKPHDDY
601: GMENKRLVME LSFTRENLRM KEMEVLAVQR ALTFKDEEIN VVMGRLEAKE QELKKLKEET INDSEDLKVL YALAQERVGE KTMGDLAIEM LQLEAANLEV
701: EAATSALQKL AKMSTELLTQ ADMSIEADTT HTVMPERGYS EGSNECLGEV KTEVVRLWSL TEKLLENAGI VAGTSTCMEG VIL
101: DLPYSNLGVL ESDLEAALVA LLKREEDLHD AERKLLSDKN KLNRAKEELE KREKTISEAS LKHESLQEEL KRANVELASQ AREIEELKHK LRERDEERAA
201: LQSSLTLKEE ELEKMRQEIA NRSKEVSMAI SEFESKSQLL SKANEVVKRQ EGEIYALQRA LEEKEEELEI SKATKKLEQE KLRETEANLK KQTEEWLIAQ
301: DEVNKLKEET VKRLGEANET MEDFMKVKKL LTDVRFELIS SREALVFSRE QMEEKELLLE KQLEELEEQR KSVLSYMQSL RDAHTEVESE RVKLRVVEAK
401: NFALEREISV QKELLEDLRE ELQKEKPLLE LAMHDISVIQ DELYKKANAF QVSQNLLQEK ESSLVEAKLE IQHLKSEQAS LELLLQEKDE ELAEARNKLG
501: EVNQEVTELK ALMISREDQL MEATEMLKEK DVHLHRIEGE LGSSKLKVTE AEMVVERIAE LTNRLLMSTT NGQNQNAMRI NNEISIDSMQ QPLEKPHDDY
601: GMENKRLVME LSFTRENLRM KEMEVLAVQR ALTFKDEEIN VVMGRLEAKE QELKKLKEET INDSEDLKVL YALAQERVGE KTMGDLAIEM LQLEAANLEV
701: EAATSALQKL AKMSTELLTQ ADMSIEADTT HTVMPERGYS EGSNECLGEV KTEVVRLWSL TEKLLENAGI VAGTSTCMEG VIL
Arabidopsis Description
Myosin heavy chain-related protein [Source:UniProtKB/TrEMBL;Acc:Q8H1E5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.