Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011357.1-P | Field mustard | nucleus | 98.55 | 98.84 |
| CDX68863 | Canola | nucleus | 93.04 | 93.31 |
| CDY23332 | Canola | nucleus | 73.33 | 71.07 |
| CDY51673 | Canola | nucleus | 73.04 | 70.39 |
| AT4G32570.1 | Thale cress | nucleus | 73.62 | 70.36 |
| CDY30950 | Canola | nucleus | 33.04 | 48.72 |
| CDX83601 | Canola | mitochondrion | 28.7 | 33.9 |
| KRH61848 | Soybean | cytosol, plastid | 40.29 | 33.49 |
| KRH52520 | Soybean | cytosol, plastid | 38.55 | 32.2 |
| VIT_04s0008g04950.t01 | Wine grape | plastid | 39.71 | 31.07 |
| Solyc06g065650.2.1 | Tomato | nucleus | 35.65 | 28.81 |
| PGSC0003DMT400067114 | Potato | nucleus | 35.07 | 28.34 |
| KRH05071 | Soybean | nucleus | 30.72 | 27.97 |
| GSMUA_Achr6P01670_001 | Banana | cytosol | 27.25 | 25.9 |
| GSMUA_Achr2P08320_001 | Banana | nucleus | 20.29 | 22.36 |
| GSMUA_AchrUn_... | Banana | cytosol | 20.58 | 21.71 |
Protein Annotations
| EnsemblPlants:CDX75256 | EnsemblPlantsGene:GSBRNA2T00121119001 | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF8 |
| PFAM:PF06200 | PFscan:PS51320 | ProteinID:CDX75256 | ProteinID:CDX75256.1 | SEG:seg | SMART:SM00979 |
| UniParc:UPI0004EDCBED | MapMan:15.5.45 | : | : | : | : |
Description
BnaA01g04460D
Coordinates
chrLK031804:-:341968..344174
Molecular Weight (calculated)
37542.7 Da
IEP (calculated)
10.213
GRAVY (calculated)
-0.821
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKRNNNDDV DSRLRVKEQQ DKLLFHDFLG SKTPTLASTS MLPLDKADKP VTASASSAGG RGGLSSTSDL GSGVGSHLDG IQLFGQRREA SGSIMSNRFS
101: GNKRSNSDSH ITTQEQHPEA LHWSKLLRSG PGSHSVNVAN QSPRGGGQIS HLLHQLSSSR FKDDAVAQTA ADEGSRTGMK GPRIMSSFTM PNPSKVECLT
201: PSSTANRKYL TSSTKQMTIF YGGQAHVFDD VHPNKADVIM ALAGSSGGSW STDLSHKLKT KNNTSDGPYK QGQVYEGGGS SRETPFWSPD IRARPVHQDT
301: TSSPCHRIFT QPGREQHQGS IISRRRDTRD PVRISDPEKK LHDYV
101: GNKRSNSDSH ITTQEQHPEA LHWSKLLRSG PGSHSVNVAN QSPRGGGQIS HLLHQLSSSR FKDDAVAQTA ADEGSRTGMK GPRIMSSFTM PNPSKVECLT
201: PSSTANRKYL TSSTKQMTIF YGGQAHVFDD VHPNKADVIM ALAGSSGGSW STDLSHKLKT KNNTSDGPYK QGQVYEGGGS SRETPFWSPD IRARPVHQDT
301: TSSPCHRIFT QPGREQHQGS IISRRRDTRD PVRISDPEKK LHDYV
001: MMVNHNNGQR PTDIDSRLRQ TEQDKLLFHD FLGSKNPTLA STSMADHRLP PDNKAAKAAM TPSTASASSA GGLGGLSSTS DLVERHSGGG NHLDGIQLFG
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGREHQGSI ISRGRDIRDP VHRSDPEKEA T
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGREHQGSI ISRGRDIRDP VHRSDPEKEA T
Arabidopsis Description
TIFY8Protein TIFY 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84MB2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.