Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 46.96 | 44.95 |
| GSMUA_Achr6P01670_001 | Banana | cytosol | 31.63 | 27.27 |
| VIT_04s0008g04950.t01 | Wine grape | plastid | 35.14 | 24.94 |
| Solyc06g065650.2.1 | Tomato | nucleus | 32.27 | 23.65 |
| PGSC0003DMT400067114 | Potato | nucleus | 32.27 | 23.65 |
| KRH61848 | Soybean | cytosol, plastid | 30.99 | 23.37 |
| KRH52520 | Soybean | cytosol, plastid | 30.67 | 23.24 |
| KRH05071 | Soybean | nucleus | 27.48 | 22.69 |
| CDY51673 | Canola | nucleus | 24.6 | 21.51 |
| CDY23332 | Canola | nucleus | 24.28 | 21.35 |
| Bra040086.1-P | Field mustard | nucleus | 23.96 | 21.01 |
| AT4G32570.1 | Thale cress | nucleus | 23.96 | 20.78 |
| CDX68863 | Canola | nucleus | 22.68 | 20.64 |
| Bra011357.1-P | Field mustard | nucleus | 22.36 | 20.35 |
| CDX75256 | Canola | nucleus | 22.36 | 20.29 |
| CDY30950 | Canola | nucleus | 15.02 | 20.09 |
| CDX83601 | Canola | mitochondrion | 12.46 | 13.36 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P08320_001 | EnsemblPlants:GSMUA_Achr2T08320_001 | EnsemblPlantsGene:GSMUA_Achr2G08320_001 | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF8 | PFAM:PF06200 | PFscan:PS51320 | SEG:seg | SMART:SM00979 | UniParc:UPI000295B476 |
| UniProt:M0S673 | MapMan:15.5.45 | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G08320_001]
Coordinates
chr2:+:12347393..12349385
Molecular Weight (calculated)
33687.5 Da
IEP (calculated)
8.501
GRAVY (calculated)
-0.483
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSSEVFHFH GRKNAISDPE GGNTLPGRKR SHPESVYSGL IDRAFPLSSG SPESPCLIKM FGKEIVSERP DKARDDEIML SMHRPPRPTS LVLHPPLSSR
101: PDSLSSKLEQ SLSRSPGRLL HASCFSKATI SSSYVNKDAS AVATVISQSS IDDGSRTNIK ASGVVSISNP VSMVCEKIST EFLPRPKASH ATESETSNAV
201: RRSKAASPGR QMTIFYSGQA HVFDSVHPNK ADVILALAGS NGVSWSTTYH SRSSDQSIVN EAKTREEAWT SNLPISVQGD MSHQIAEIPP PSDHSAIRSG
301: GKDVGDEGSI QLL
101: PDSLSSKLEQ SLSRSPGRLL HASCFSKATI SSSYVNKDAS AVATVISQSS IDDGSRTNIK ASGVVSISNP VSMVCEKIST EFLPRPKASH ATESETSNAV
201: RRSKAASPGR QMTIFYSGQA HVFDSVHPNK ADVILALAGS NGVSWSTTYH SRSSDQSIVN EAKTREEAWT SNLPISVQGD MSHQIAEIPP PSDHSAIRSG
301: GKDVGDEGSI QLL
001: MMVNHNNGQR PTDIDSRLRQ TEQDKLLFHD FLGSKNPTLA STSMADHRLP PDNKAAKAAM TPSTASASSA GGLGGLSSTS DLVERHSGGG NHLDGIQLFG
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGDFFLKKT RFQQKFWLAS YKY
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGDFFLKKT RFQQKFWLAS YKY
Arabidopsis Description
TIFY8Protein TIFY 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84MB2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.