Factsheet for GSMUA_Achr6P20050_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P21550_001
GSMUA_Achr3P02220_001
GSMUA_Achr4P14220_001
GSMUA_Achr6P11170_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56150.1	GSMUA_Achr10P...	AT4G25200.1	21798944
AT1G79130.1	GSMUA_Achr2P21550_001	AT4G33920.1	21798944
AT1G79130.1	GSMUA_Achr3P02220_001	AT4G33920.1	21798944
AT1G79130.1	GSMUA_Achr4P14220_001	AT4G33920.1	21798944
AT1G79130.1	GSMUA_Achr6P11170_001	AT4G33920.1	21798944
AT3G12830.1	GSMUA_Achr2P21550_001	AT4G33920.1	21798944
AT3G12830.1	GSMUA_Achr3P02220_001	AT4G33920.1	21798944
AT3G12830.1	GSMUA_Achr4P14220_001	AT4G33920.1	21798944
AT3G12830.1	GSMUA_Achr6P11170_001	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P30660_001	Banana	mitochondrion	78.69	71.11
GSMUA_Achr5P00300_001	Banana	cytosol, mitochondrion, nucleus	64.75	56.83
TraesCS4A01G297200.1	Wheat	mitochondrion	46.72	55.34
TraesCS4B01G016500.1	Wheat	mitochondrion, plastid	47.54	53.7
Zm00001d033464_P001	Maize	mitochondrion	45.08	53.4
TraesCS4D01G014900.1	Wheat	mitochondrion	45.08	53.4
TraesCS4A01G297100.1	Wheat	mitochondrion, plastid	45.08	53.4
HORVU4Hr1G002600.1	Barley	mitochondrion, nucleus	46.72	53.27
AT1G56150.1	Thale cress	mitochondrion	47.54	52.73
Zm00001d031146_P001	Maize	mitochondrion	47.54	52.25
KXG37892	Sorghum	cytosol, mitochondrion	46.72	50.44
TraesCS6D01G130600.1	Wheat	mitochondrion	44.26	49.54
OQU76860	Sorghum	mitochondrion	55.74	48.92
EES17445	Sorghum	mitochondrion	45.9	47.86
Solyc07g066560.1.1	Tomato	mitochondrion	49.18	47.62
PGSC0003DMT400057238	Potato	mitochondrion	49.18	46.51
TraesCS6B01G169500.1	Wheat	mitochondrion	44.26	46.15
Zm00001d053815_P001	Maize	mitochondrion	47.54	46.03
TraesCS7A01G468900.1	Wheat	mitochondrion	50.0	45.86
TraesCS6A01G141200.1	Wheat	mitochondrion	45.08	45.83
OQU84433	Sorghum	mitochondrion, peroxisome	45.9	45.53
Zm00001d046986_P001	Maize	mitochondrion	51.64	45.32
Zm00001d010775_P001	Maize	cytosol	30.33	45.12
VIT_19s0085g00010.t01	Wine grape	mitochondrion	48.36	45.04
CDY69352	Canola	mitochondrion	45.9	44.44
Bra001473.1-P	Field mustard	mitochondrion	45.9	44.44
CDX82573	Canola	mitochondrion	45.9	44.44
Zm00001d036623_P001	Maize	mitochondrion	48.36	44.03
TraesCS7A01G468600.1	Wheat	mitochondrion	50.0	43.88
TraesCS7D01G456300.1	Wheat	mitochondrion	47.54	43.61
Os06t0671150-00	Rice	mitochondrion	50.0	43.57
TraesCS7D01G456400.1	Wheat	mitochondrion	49.18	43.17
TraesCS7B01G370400.1	Wheat	mitochondrion	49.18	43.17
TraesCS7B01G370300.1	Wheat	mitochondrion	49.18	43.17
TraesCS3B01G493600.1	Wheat	mitochondrion	33.61	43.16
Zm00001d015354_P001	Maize	mitochondrion	44.26	42.86
TraesCS7B01G370100.1	Wheat	mitochondrion	48.36	42.45
TraesCS7B01G370500.1	Wheat	mitochondrion	48.36	42.45
TraesCS7D01G456500.1	Wheat	mitochondrion	48.36	42.45
Os12t0626200-01	Rice	mitochondrion	45.08	42.31
TraesCS7D01G456100.1	Wheat	mitochondrion	48.36	42.14
KRH13714	Soybean	mitochondrion	47.54	41.73
CDY52877	Canola	mitochondrion	45.08	41.67
Bra034725.1-P	Field mustard	mitochondrion	45.08	41.67
CDY08400	Canola	mitochondrion	45.08	41.67
KRH43739	Soybean	mitochondrion	46.72	41.3
TraesCS2D01G415500.1	Wheat	mitochondrion	39.34	41.03
TraesCS7B01G370200.1	Wheat	mitochondrion	46.72	41.01
AT3G12830.1	Thale cress	mitochondrion	44.26	40.91
CDY43398	Canola	mitochondrion	44.26	40.6
Bra039345.1-P	Field mustard	mitochondrion	44.26	40.6
AT1G79130.1	Thale cress	mitochondrion	44.26	40.3
GSMUA_Achr4P31990_001	Banana	cytosol	53.28	40.12
TraesCS2B01G437000.1	Wheat	mitochondrion	35.25	39.81
Bra026717.1-P	Field mustard	mitochondrion	47.54	39.73
CDY51000	Canola	mitochondrion	47.54	39.73
Bra026044.1-P	Field mustard	mitochondrion	46.72	39.31
CDX81766	Canola	mitochondrion	46.72	38.78
AT1G16510.1	Thale cress	mitochondrion	46.72	38.78
EES12863	Sorghum	mitochondrion	39.34	38.71
TraesCS7A01G468700.1	Wheat	mitochondrion	35.25	37.72
Bra035094.1-P	Field mustard	mitochondrion	44.26	37.5
CDX87405	Canola	mitochondrion	43.44	36.81
Zm00001d026308_P001	Maize	mitochondrion	36.89	36.29
HORVU6Hr1G027640.1	Barley	plastid	45.08	35.48
GSMUA_Achr6P31530_001	Banana	plastid	43.44	33.76
Os04t0617050-01	Rice	cytosol, extracellular, mitochondrion	37.7	33.09
TraesCS7B01G370600.1	Wheat	plastid	48.36	32.24
TraesCS7A01G468500.1	Wheat	plastid	46.72	31.67
HORVU7Hr1G107340.1	Barley	mitochondrion	48.36	27.83
Zm00001d010776_P001	Maize	cytosol	27.87	27.42
TraesCS7D01G456200.1	Wheat	nucleus	47.54	27.36
HORVU2Hr1G098310.1	Barley	cytosol	27.87	25.56
CDY24242	Canola	mitochondrion	44.26	22.31

Protein Annotations

EnsemblPlants:GSMUA_Achr6P20050_001	EnsemblPlants:GSMUA_Achr6T20050_001	EnsemblPlantsGene:GSMUA_Achr6G20050_001	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF37	PFAM:PF02519	SEG:seg	UniParc:UPI000294BD63
UniProt:M0T8K3	MapMan:35.1	:	:	:	:

Description

Auxin-responsive family protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G20050_001]

Coordinates

chr6:+:14453711..14454079

Molecular Weight (calculated)

13516.3 Da

IEP (calculated)

8.507

GRAVY (calculated)

-0.187

Length

122 amino acids

Sequence
(BLAST)

001: MKRLIRRLSR VADSSHDRPL QAAKGGPRRV PEGHVPLCVG EEMERFAVRA ELLGRPALVE LLRRSAQEYG YEQQGVLRIP CPVPLFCRLL FLSSSSSSAA
101: AADPALEELF RSLPDEGWSF AA

Best Arabidopsis Sequence Match ( AT1G56150.1 )
(BLAST)

001: MKQLIRRLSR VADSTQYSLL RSESQRGRTK KEKHKSWVPE GHVPVYVGHE MERFVVNAEL LNHPVFVALL KQSAQEYGYE QQGVLRIPCH VLVFERILES
101: LRLGLADRVT

Arabidopsis Description

SAUR71Auxin-responsive protein SAUR71 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGU2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.