Factsheet for GSMUA_Achr6P11170_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P10530_001
GSMUA_Achr5P24150_001
GSMUA_Achr6P03720_001
GSMUA_Achr9P19570_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33920.1	GSMUA_Achr1P10530_001	AT2G24400.1	21798944
AT4G33920.1	GSMUA_Achr5P24150_001	AT2G24400.1	21798944
AT4G33920.1	GSMUA_Achr6P03720_001	AT2G24400.1	21798944
AT4G33920.1	GSMUA_Achr9P19570_001	AT2G24400.1	21798944
AT4G33920.1	GSMUA_Achr11P...	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02220_001	Banana	mitochondrion	81.91	81.91
GSMUA_Achr2P21550_001	Banana	mitochondrion	82.45	80.31
VIT_03s0091g00470.t01	Wine grape	mitochondrion	78.19	77.17
VIT_07s0129g00520.t01	Wine grape	cytosol	76.06	74.48
KRG91074	Soybean	cytosol, mitochondrion	73.4	73.99
Solyc01g107300.2.1	Tomato	cytosol	44.68	73.36
GSMUA_Achr4P14220_001	Banana	mitochondrion	72.61	73.19
KRH35699	Soybean	mitochondrion	73.4	73.02
PGSC0003DMT400066175	Potato	cytosol	71.54	71.73
VIT_18s0001g09390.t01	Wine grape	mitochondrion	71.54	71.16
PGSC0003DMT400013942	Potato	cytosol, mitochondrion	69.41	70.35
Os12t0580900-01	Rice	mitochondrion	72.07	69.13
TraesCS5B01G078500.1	Wheat	mitochondrion	70.21	68.93
HORVU5Hr1G018930.2	Barley	mitochondrion	69.68	68.41
KRH28403	Soybean	cytosol	68.09	68.27
AT4G33920.1	Thale cress	mitochondrion	68.88	68.16
Solyc02g092750.2.1	Tomato	cytosol	66.22	68.03
TraesCS5D01G085200.1	Wheat	mitochondrion	69.15	67.89
Bra036972.1-P	Field mustard	mitochondrion	67.29	67.65
KRH77072	Soybean	cytosol	67.82	67.64
PGSC0003DMT400064207	Potato	cytosol	66.76	67.47
CDX72438	Canola	mitochondrion	67.02	67.38
Solyc10g049630.1.1	Tomato	mitochondrion, nucleus	68.09	67.37
CDY49385	Canola	mitochondrion	66.76	67.11
CDY28332	Canola	mitochondrion	68.09	66.67
TraesCS5A01G072500.1	Wheat	mitochondrion	67.82	66.58
Bra034592.1-P	Field mustard	mitochondrion	68.09	66.49
CDY51944	Canola	mitochondrion	68.09	66.49
Solyc01g107310.2.1	Tomato	mitochondrion	31.12	63.24
GSMUA_Achr4P04870_001	Banana	cytosol	52.13	57.31
GSMUA_Achr6P23480_001	Banana	cytosol	50.53	56.89
GSMUA_Achr6P15470_001	Banana	mitochondrion	55.59	55.15
GSMUA_Achr10P...	Banana	cytosol	54.52	54.52
GSMUA_Achr3P00610_001	Banana	cytosol	50.27	54.31
GSMUA_Achr11P...	Banana	mitochondrion	54.26	53.97
GSMUA_Achr8P13470_001	Banana	mitochondrion	54.52	53.66
GSMUA_Achr2P02070_001	Banana	mitochondrion	51.86	52.42
GSMUA_Achr3P26820_001	Banana	mitochondrion	53.72	51.27
GSMUA_Achr5P11520_001	Banana	mitochondrion	53.99	51.26
GSMUA_Achr1P26350_001	Banana	mitochondrion, peroxisome, plastid	52.93	50.13
GSMUA_Achr7P03910_001	Banana	cytosol, nucleus, peroxisome	50.53	49.61
GSMUA_Achr8P13120_001	Banana	cytosol	51.33	49.23
GSMUA_Achr9P24110_001	Banana	cytosol	51.06	48.0
GSMUA_Achr10P...	Banana	cytosol	26.06	27.61
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plastid	27.39	21.59
GSMUA_Achr5P29080_001	Banana	mitochondrion	29.79	19.41
GSMUA_Achr5P13850_001	Banana	nucleus	30.32	18.75
GSMUA_Achr2P16350_001	Banana	mitochondrion	27.66	18.67
GSMUA_Achr9P03940_001	Banana	cytosol, nucleus, peroxisome	28.46	18.64
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	30.85	18.44
GSMUA_Achr10P...	Banana	mitochondrion, nucleus, plastid	28.46	17.57
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus, peroxisome	27.13	17.5
GSMUA_Achr8P18740_001	Banana	cytosol, nucleus, peroxisome	30.85	15.59

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.4	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr6G11170_001	EnsemblPlants:GSMUA_Achr6P11170_001	EnsemblPlants:GSMUA_Achr6T11170_001	InterPro:IPR001932	InterPro:IPR036457	UniProt:M0T615
PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF362	SMART:SM00331	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI000295A7D1	SEG:seg	:	:	:	:

Description

Probable protein phosphatase 2C 78 [Source:GMGC_GENE;Acc:GSMUA_Achr6G11170_001]

Coordinates

chr6:-:7425253..7429283

Molecular Weight (calculated)

41942.4 Da

IEP (calculated)

8.730

GRAVY (calculated)

-0.221

Length

376 amino acids

Sequence
(BLAST)

001: MLRSCVRPLE RCFGRLGGGD GLMWHMDLKP HASGEFSIAV VQANNSLEDQ GQVITSPSAT FVGVYDGHGG PEASRFVSNR LFPHLDRFAS EQGGLSADVI
101: KKAFDATEEE FFHLVKRSWL SRPQIASVGS CCLVGAIAGD TLYVANLGDS RAVLGRRALG RRTVVAERLS TDHNVSVEEV RKEVAELHPD DKQIVVHTRG
201: VWRIKGIIQV SRSIGDIYLK KPEFSRDPLF HQFVSPVPLK RPVITAEPSI RVRKLMPHDL FLIFASDGLW EQLSDEAAVE IVFKNPRAGI AKRLIRAALN
301: EAARKREMRY DDIKRIGKGI RRHFHDDITV IVIFLDQNHQ GVHSKIKGSI YDCTTAPVDI FSLNADEPGD PVRRVE

Best Arabidopsis Sequence Match ( AT4G33920.1 )
(BLAST)

001: MLRALARPLE RCLGSRASGD GLLWQSELRP HAGGDYSIAV VQANSRLEDQ SQVFTSSSAT YVGVYDGHGG PEASRFVNRH LFPYMHKFAR EHGGLSVDVI
101: KKAFKETEEE FCGMVKRSLP MKPQMATVGS CCLVGAISND TLYVANLGDS RAVLGSVVSG VDSNKGAVAE RLSTDHNVAV EEVRKEVKAL NPDDSQIVLY
201: TRGVWRIKGI IQVSRSIGDV YLKKPEYYRD PIFQRHGNPI PLRRPAMTAE PSIIVRKLKP QDLFLIFASD GLWEHLSDET AVEIVLKHPR TGIARRLVRA
301: ALEEAAKKRE MRYGDIKKIA KGIRRHFHDD ISVIVVYLDQ NKTSSSNSKL VKQGGITAPP DIYSLHSDEA EQRRLLNVLY

Arabidopsis Description

Probable protein phosphatase 2C 63 [Source:UniProtKB/Swiss-Prot;Acc:O81760]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.