Factsheet for GSMUA_Achr6P03720_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P23000_001
GSMUA_Achr5P26360_001
GSMUA_Achr7P27110_001
GSMUA_Achr8P01460_001
GSMUA_Achr9P30020_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24400.1	GSMUA_Achr3P23000_001	AT4G27280.1	21798944
AT2G24400.1	GSMUA_Achr5P26360_001	AT4G27280.1	21798944
AT2G24400.1	GSMUA_Achr7P27110_001	AT4G27280.1	21798944
AT2G24400.1	GSMUA_Achr8P01460_001	AT4G27280.1	21798944
AT2G24400.1	GSMUA_Achr9P30020_001	AT4G27280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P24150_001	Banana	mitochondrion	53.33	66.67
GSMUA_Achr1P10530_001	Banana	cytosol	53.33	64.0
GSMUA_Achr9P19570_001	Banana	cytosol, plastid	51.33	63.11
GSMUA_Achr4P12510_001	Banana	cytosol	34.0	62.96
GSMUA_Achr4P05740_001	Banana	cytosol, plastid	63.33	62.09
KRH46980	Soybean	cytosol	54.0	57.04
KRH44681	Soybean	plastid	54.67	52.9
VIT_09s0054g00660.t01	Wine grape	cytosol, plastid	60.67	52.6
VIT_09s0054g00740.t01	Wine grape	cytosol, plastid	61.33	51.98
VIT_04s0008g02800.t01	Wine grape	plastid	53.33	49.38
KRH16185	Soybean	nucleus	57.33	48.59
KRH04818	Soybean	cytosol	55.33	47.98
PGSC0003DMT400023703	Potato	nucleus	53.33	45.71
KRH52631	Soybean	plastid	51.33	45.03
AT2G24400.1	Thale cress	cytosol, mitochondrion, nucleus	53.33	44.94
CDY46148	Canola	cytosol, mitochondrion, nucleus	52.0	44.32
CDY20311	Canola	cytosol, mitochondrion, nucleus	51.33	44.0
KRH61972	Soybean	plastid	50.0	43.86
Bra032097.1-P	Field mustard	cytosol, mitochondrion, nucleus	51.33	43.5
Solyc03g124020.1.1	Tomato	nucleus	53.33	42.55
CDY36449	Canola	cytosol, nucleus, plastid	51.33	42.31
AT4G31320.1	Thale cress	cytosol	52.0	41.27
CDY13423	Canola	nucleus	48.67	41.01
CDY28255	Canola	nucleus	51.33	40.96
CDX68733	Canola	nucleus	51.33	40.96
Bra011258.1-P	Field mustard	nucleus	51.33	40.96
Bra024013.1-P	Field mustard	nucleus	51.33	40.53
CDX72302	Canola	nucleus	50.67	36.36
GSMUA_Achr7P19840_001	Banana	cytosol	32.0	31.17
GSMUA_Achr6P31030_001	Banana	cytosol, mitochondrion	31.33	30.52
GSMUA_Achr5P22090_001	Banana	cytosol	29.33	28.57
GSMUA_Achr3P05530_001	Banana	mitochondrion	28.0	28.19
GSMUA_Achr5P24140_001	Banana	extracellular, plastid	28.0	27.45
GSMUA_Achr9P14000_001	Banana	mitochondrion	28.67	27.39
GSMUA_Achr7P19700_001	Banana	mitochondrion	26.0	26.17

Protein Annotations

EnsemblPlants:GSMUA_Achr6P03720_001	EnsemblPlants:GSMUA_Achr6T03720_001	EnsemblPlantsGene:GSMUA_Achr6G03720_001	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF59	PFAM:PF02519	SEG:seg	UniParc:UPI0002966C0E
UniProt:M0T3X0	MapMan:35.2	:	:	:	:

Description

Putative Auxin-induced protein 6B [Source:GMGC_GENE;Acc:GSMUA_Achr6G03720_001]

Coordinates

chr6:-:2557653..2558105

Molecular Weight (calculated)

17191.0 Da

IEP (calculated)

9.195

GRAVY (calculated)

-0.418

Length

150 amino acids

Sequence
(BLAST)

001: MDQSKEGSKT TEGATLQQVL KKWKKLAAAP KDNSKKSIKF LKKTLSFSNA WAQSTGVPKG FLAVCVGEEM KRFVIPTDYL HHEAFQVLLR EAEEEYGFRQ
101: EGVLRIPCQV AAFERILEMV QKKKEGFCYI SPEVEAEMAM YHLPHKMMCR

Best Arabidopsis Sequence Match ( AT2G24400.1 )
(BLAST)

001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR

Arabidopsis Description

At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.