Factsheet for GSMUA_Achr7P27110_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P02480_001
GSMUA_Achr7P01120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54490.1	GSMUA_Achr5P02480_001	AT2G34650.1	12857841
AT5G54490.1	GSMUA_Achr7P01120_001	AT2G34650.1	12857841

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P30020_001	Banana	cytosol	66.38	68.14
TraesCS3B01G351500.1	Wheat	cytosol	63.79	66.67
TraesCS3A01G315400.1	Wheat	cytosol	63.79	66.67
TraesCS3D01G316100.1	Wheat	cytosol	62.93	65.77
GSMUA_Achr3P23000_001	Banana	cytosol	59.48	65.09
Os01t0783700-01	Rice	cytosol	61.21	63.96
Zm00001d043258_P001	Maize	cytosol	50.86	63.44
VIT_12s0134g00240.t01	Wine grape	cytosol	62.93	62.93
KXG33526	Sorghum	cytosol	55.17	62.75
KXG25648	Sorghum	cytosol	58.62	61.82
Zm00001d031419_P001	Maize	cytosol	57.76	60.91
GSMUA_Achr5P26360_001	Banana	cytosol	61.21	60.17
GSMUA_Achr8P01460_001	Banana	cytosol	57.76	59.82
PGSC0003DMT400067274	Potato	cytosol	61.21	59.66
PGSC0003DMT400064403	Potato	cytosol	59.48	58.97
Solyc07g053050.1.1	Tomato	cytosol	58.62	58.62
KRH21601	Soybean	cytosol	56.9	57.89
VIT_02s0012g00650.t01	Wine grape	cytosol	55.17	57.66
KRH55440	Soybean	cytosol	50.0	57.43
VIT_19s0014g03970.t01	Wine grape	cytosol	53.45	57.41
KRH25447	Soybean	cytosol	62.07	57.14
KRH10720	Soybean	cytosol	56.03	57.02
PGSC0003DMT400064404	Potato	cytosol	59.48	56.56
Solyc10g006700.1.1	Tomato	cytosol	59.48	56.56
VIT_02s0012g00640.t01	Wine grape	cytosol	54.31	56.25
Solyc02g079720.1.1	Tomato	cytosol	51.72	56.07
VIT_00s0347g00040.t01	Wine grape	cytosol	54.31	55.75
KRH27149	Soybean	cytosol	55.17	55.65
KRH22182	Soybean	cytosol	55.17	55.17
KRH26856	Soybean	cytosol	56.9	54.1
PGSC0003DMT400049542	Potato	cytosol	52.59	53.98
Solyc07g063690.1.1	Tomato	cytosol	52.59	53.98
PGSC0003DMT400057519	Potato	cytosol	53.45	53.91
Solyc02g079520.1.1	Tomato	nucleus	53.45	53.91
KRH25972	Soybean	cytosol	55.17	53.78
KRH55477	Soybean	cytosol	55.17	53.78
CDY29293	Canola	cytosol	58.62	53.54
Solyc10g006660.2.1	Tomato	cytosol	59.48	53.49
KRH22491	Soybean	cytosol	56.03	53.28
KRH26016	Soybean	cytosol	50.86	53.15
PGSC0003DMT400036057	Potato	cytosol	52.59	53.04
Solyc03g006710.1.1	Tomato	cytosol	52.59	53.04
HORVU3Hr1G077070.1	Barley	cytosol	59.48	52.27
AT5G54490.1	Thale cress	cytosol	56.9	51.97
AT4G27280.1	Thale cress	cytosol	57.76	51.54
PGSC0003DMT400012996	Potato	cytosol	50.86	51.3
CDY28767	Canola	cytosol	56.9	50.38
CDY48640	Canola	cytosol	56.9	50.38
Bra022723.1-P	Field mustard	cytosol	56.9	50.38
CDY61745	Canola	cytosol	56.03	49.62
Bra002984.1-P	Field mustard	cytosol	56.03	49.62
CDY42456	Canola	cytosol	56.03	49.62
PGSC0003DMT400064349	Potato	cytosol	50.0	49.15
VIT_19s0014g04650.t01	Wine grape	cytosol	62.93	48.67
KRH22173	Soybean	cytosol	51.72	48.39
VIT_02s0012g00660.t01	Wine grape	cytosol	50.0	48.33
GSMUA_Achr1P03980_001	Banana	cytosol	50.0	46.77
KRH27151	Soybean	cytosol	47.41	45.08
Solyc10g006740.2.1	Tomato	extracellular	48.28	38.36
CDX89262	Canola	cytosol, peroxisome, plastid	60.34	25.74
Bra026364.1-P	Field mustard	cytosol	58.62	23.29

Protein Annotations

EnsemblPlants:GSMUA_Achr7P27110_001	EnsemblPlants:GSMUA_Achr7T27110_001	EnsemblPlantsGene:GSMUA_Achr7G27110_001	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR44180
PFAM:PF13833	PFscan:PS50222	ScanProsite:PS00018	SUPFAM:SSF47473	UniParc:UPI000294CD25	UniProt:M0TL47
MapMan:35.1	:	:	:	:	:

Description

EF hand family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G27110_001]

Coordinates

chr7:+:28253190..28253540

Molecular Weight (calculated)

12752.5 Da

IEP (calculated)

3.957

GRAVY (calculated)

-0.116

Length

116 amino acids

Sequence
(BLAST)

001: MAEDSISFQD FLPSMAEKLG GEGLMAELCK GFQLLMDPES RLITLDSLRR NAAALGLEGL KDDELRGMLR EGDLDGDGAL DQIEFCVLMV RLSPELMEVS
101: EKLVEDAMGM GRWNGP

Best Arabidopsis Sequence Match ( AT2G46600.1 )
(BLAST)

001: MEPTEKSMLL ETTSTTKMET KYEDMLPVMA EKMDVEEFVS ELCKGFSLLA DPERHLITAE SLRRNSGILG IEGMSKEDAQ GMVREGDLDG DGALNQTEFC
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP

Arabidopsis Description

KICCalcium-binding protein KIC [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.