Factsheet for VIT_02s0012g00650.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g00640.t01	Wine grape	cytosol	87.39	86.61
VIT_19s0014g03970.t01	Wine grape	cytosol	83.78	86.11
VIT_02s0012g00660.t01	Wine grape	cytosol	81.08	75.0
KRH55440	Soybean	cytosol	63.96	70.3
PGSC0003DMT400049542	Potato	cytosol	65.77	64.6
KRH26016	Soybean	cytosol	63.96	63.96
Solyc07g063690.1.1	Tomato	cytosol	64.86	63.72
VIT_00s0347g00040.t01	Wine grape	cytosol	62.16	61.06
VIT_12s0134g00240.t01	Wine grape	cytosol	63.06	60.34
TraesCS3D01G316100.1	Wheat	cytosol	55.86	55.86
TraesCS3B01G351500.1	Wheat	cytosol	55.86	55.86
GSMUA_Achr7P27110_001	Banana	cytosol	57.66	55.17
PGSC0003DMT400064349	Potato	cytosol	58.56	55.08
TraesCS3A01G315400.1	Wheat	cytosol	54.95	54.95
KRH27151	Soybean	cytosol	60.36	54.92
KRH22173	Soybean	cytosol	61.26	54.84
GSMUA_Achr3P23000_001	Banana	cytosol	51.35	53.77
GSMUA_Achr9P30020_001	Banana	cytosol	54.05	53.1
Zm00001d031419_P001	Maize	cytosol	52.25	52.73
Zm00001d043258_P001	Maize	cytosol	44.14	52.69
Os01t0783700-01	Rice	cytosol	52.25	52.25
KXG33526	Sorghum	cytosol	47.75	51.96
KXG25648	Sorghum	cytosol	49.55	50.0
GSMUA_Achr8P01460_001	Banana	cytosol	49.55	49.11
GSMUA_Achr5P26360_001	Banana	cytosol	51.35	48.31
TraesCS7A01G450400.1	Wheat	cytosol	53.15	47.2
Os06t0683400-02	Rice	cytosol	52.25	46.4
TraesCS7B01G350200.1	Wheat	cytosol	53.15	45.74
VIT_15s0046g00070.t01	Wine grape	cytosol	51.35	44.88
TraesCS7D01G439800.1	Wheat	cytosol	53.15	44.03
HORVU3Hr1G077070.1	Barley	cytosol	52.25	43.94
Solyc10g006740.2.1	Tomato	extracellular	57.66	43.84
Zm00001d014491_P001	Maize	cytosol	51.35	43.18
EER88832	Sorghum	cytosol	50.45	43.08
VIT_19s0014g04650.t01	Wine grape	cytosol	57.66	42.67
HORVU7Hr1G101740.2	Barley	cytosol, plastid	39.64	27.33

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100266004	wikigene:100266004	MapMan:35.1	ProteinID:CCB57933	ProteinID:CCB57933.1
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	UniProt:F6HTC3	EMBL:FN596247	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	EntrezGene:LOC100266004	wikigene:LOC100266004	PFAM:PF13833
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR44180	PANTHER:PTHR44180:SF2	SUPFAM:SSF47473	UniParc:UPI0001982C72
ArrayExpress:VIT_02s0012g00650	EnsemblPlantsGene:VIT_02s0012g00650	EnsemblPlants:VIT_02s0012g00650.t01	RefSeq:XP_002279083	RefSeq:XP_002279083.1	:

Description

No Description!

Coordinates

chr2:-:6541659..6542224

Molecular Weight (calculated)

12427.0 Da

IEP (calculated)

3.599

GRAVY (calculated)

-0.002

Length

111 amino acids

Sequence
(BLAST)

001: MEVDEGGVQF EDYFPSMMEG LGAEGFILEL CNGFHLLMDV EKGLITLESL RRSTIELGLQ EMGDDELVWM LSEGDLDGDG ALNQTEFCIL MLRLSPGLME
101: GPKQWVEEMC T

Best Arabidopsis Sequence Match ( AT5G54490.1 )
(BLAST)

001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH

Arabidopsis Description

PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.