Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d031068_P001 | |
| Zm00001d033234_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54490.1 | Zm00001d031068_P001 | AT2G34650.1 | 12857841 |
| AT5G54490.1 | Zm00001d033234_P001 | AT2G34650.1 | 12857841 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33526 | Sorghum | cytosol | 77.42 | 70.59 |
| Zm00001d031419_P001 | Maize | cytosol | 75.27 | 63.64 |
| TraesCS3B01G351500.1 | Wheat | cytosol | 73.12 | 61.26 |
| TraesCS3A01G315400.1 | Wheat | cytosol | 72.04 | 60.36 |
| TraesCS3D01G316100.1 | Wheat | cytosol | 70.97 | 59.46 |
| Os01t0783700-01 | Rice | cytosol | 69.89 | 58.56 |
| HORVU3Hr1G077070.1 | Barley | cytosol | 74.19 | 52.27 |
| GSMUA_Achr7P27110_001 | Banana | cytosol | 63.44 | 50.86 |
| KRH55440 | Soybean | cytosol | 53.76 | 49.51 |
| VIT_12s0134g00240.t01 | Wine grape | cytosol | 61.29 | 49.14 |
| GSMUA_Achr8P01460_001 | Banana | cytosol | 56.99 | 47.32 |
| GSMUA_Achr9P30020_001 | Banana | cytosol | 56.99 | 46.9 |
| Solyc07g053050.1.1 | Tomato | cytosol | 56.99 | 45.69 |
| PGSC0003DMT400067274 | Potato | cytosol | 58.06 | 45.38 |
| VIT_19s0014g03970.t01 | Wine grape | cytosol | 52.69 | 45.37 |
| PGSC0003DMT400064403 | Potato | cytosol | 56.99 | 45.3 |
| PGSC0003DMT400036057 | Potato | cytosol | 55.91 | 45.22 |
| VIT_00s0347g00040.t01 | Wine grape | cytosol | 54.84 | 45.13 |
| Solyc07g063690.1.1 | Tomato | cytosol | 54.84 | 45.13 |
| PGSC0003DMT400049542 | Potato | cytosol | 53.76 | 44.25 |
| KRH26016 | Soybean | cytosol | 52.69 | 44.14 |
| VIT_02s0012g00650.t01 | Wine grape | cytosol | 52.69 | 44.14 |
| Solyc02g079720.1.1 | Tomato | cytosol | 50.54 | 43.93 |
| KRH21601 | Soybean | cytosol | 53.76 | 43.86 |
| Solyc10g006700.1.1 | Tomato | cytosol | 56.99 | 43.44 |
| PGSC0003DMT400064404 | Potato | cytosol | 56.99 | 43.44 |
| KRH10720 | Soybean | cytosol | 52.69 | 42.98 |
| VIT_02s0012g00640.t01 | Wine grape | cytosol | 51.61 | 42.86 |
| KRH27149 | Soybean | cytosol | 52.69 | 42.61 |
| KRH25447 | Soybean | cytosol | 56.99 | 42.06 |
| KRH26856 | Soybean | cytosol | 54.84 | 41.8 |
| PGSC0003DMT400064349 | Potato | cytosol | 52.69 | 41.53 |
| KRH22182 | Soybean | cytosol | 51.61 | 41.38 |
| Solyc10g006660.2.1 | Tomato | cytosol | 56.99 | 41.09 |
| KRH22491 | Soybean | cytosol | 53.76 | 40.98 |
| KRH25972 | Soybean | cytosol | 51.61 | 40.34 |
| KRH22173 | Soybean | cytosol | 53.76 | 40.32 |
| PGSC0003DMT400057519 | Potato | cytosol | 49.46 | 40.0 |
| Solyc03g006710.1.1 | Tomato | cytosol | 49.46 | 40.0 |
| VIT_02s0012g00660.t01 | Wine grape | cytosol | 51.61 | 40.0 |
| CDY28767 | Canola | cytosol | 55.91 | 39.69 |
| Bra022723.1-P | Field mustard | cytosol | 55.91 | 39.69 |
| KRH55477 | Soybean | cytosol | 50.54 | 39.5 |
| AT5G54490.1 | Thale cress | cytosol | 53.76 | 39.37 |
| KRH27151 | Soybean | cytosol | 51.61 | 39.34 |
| Solyc02g079520.1.1 | Tomato | nucleus | 48.39 | 39.13 |
| PGSC0003DMT400012996 | Potato | cytosol | 48.39 | 39.13 |
| CDY61745 | Canola | cytosol | 54.84 | 38.93 |
| CDY48640 | Canola | cytosol | 54.84 | 38.93 |
| CDY42456 | Canola | cytosol | 54.84 | 38.93 |
| Bra002984.1-P | Field mustard | cytosol | 54.84 | 38.93 |
| CDY29293 | Canola | cytosol | 52.69 | 38.58 |
| AT4G27280.1 | Thale cress | cytosol | 53.76 | 38.46 |
| VIT_19s0014g04650.t01 | Wine grape | cytosol | 56.99 | 35.33 |
| Zm00001d014491_P001 | Maize | cytosol | 48.39 | 34.09 |
| Solyc10g006740.2.1 | Tomato | extracellular | 51.61 | 32.88 |
| Zm00001d053926_P001 | Maize | cytosol | 47.31 | 26.35 |
| CDX89262 | Canola | cytosol, peroxisome, plastid | 53.76 | 18.38 |
| Bra026364.1-P | Field mustard | cytosol | 52.69 | 16.78 |
Protein Annotations
| EnsemblPlants:Zm00001d043258_P001 | EnsemblPlants:Zm00001d043258_T001 | EnsemblPlantsGene:Zm00001d043258 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR44180 |
| PANTHER:PTHR44180:SF6 | PFAM:PF13833 | PFscan:PS50222 | ProteinID:ONM37301.1 | ScanProsite:PS00018 | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI0008455723 | UniProt:A0A1D6N9T0 | MapMan:35.1 | : | : |
Description
Caltractin
Coordinates
chr3:+:193663756..193664037
Molecular Weight (calculated)
10547.0 Da
IEP (calculated)
4.532
GRAVY (calculated)
-0.180
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MVRKVGVEGL IQELCKGFQL LMEPRTGKIT CQSLKQNAAR FGLGELHGDE LPEMIREGDL DGDGALDQME FCILMVRLSP KLMEEEAHMM FQY
001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH
101: MFRLSPELME ASRCVVTEVI EEEFYRH
Arabidopsis Description
PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.