CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84294
CDY17273
CDY21807
CDY36905
CDY43662
CDY54257
CDY59856
CDY68129
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54490.1	CDX84294	AT2G34650.1	12857841
AT5G54490.1	CDY17273	AT2G34650.1	12857841
AT5G54490.1	CDY43662	AT2G34650.1	12857841
AT5G54490.1	CDY21807	AT3G48100.1	18642946
AT5G54490.1	CDY36905	AT3G48100.1	18642946
AT5G54490.1	CDY54257	AT3G48100.1	18642946
AT5G54490.1	CDY59856	AT3G48100.1	18642946
AT5G54490.1	CDY68129	AT3G48100.1	18642946
AT5G54490.1	CDY70164	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28767	Canola	cytosol	93.89	93.89
CDY42456	Canola	cytosol	87.79	87.79
AT5G54490.1	Thale cress	cytosol	84.73	87.4
CDY61745	Canola	cytosol	87.02	87.02
CDY29293	Canola	cytosol	80.15	82.68
PGSC0003DMT400064403	Potato	cytosol	60.31	67.52
PGSC0003DMT400064404	Potato	cytosol	60.31	64.75
Solyc10g006700.1.1	Tomato	cytosol	59.54	63.93
KRH22182	Soybean	cytosol	54.96	62.07
KRH27149	Soybean	cytosol	54.2	61.74
Solyc10g006660.2.1	Tomato	cytosol	60.31	61.24
KRH25972	Soybean	cytosol	54.96	60.5
Os01t0783700-01	Rice	cytosol	49.62	58.56
TraesCS3A01G315400.1	Wheat	cytosol	49.62	58.56
TraesCS3B01G351500.1	Wheat	cytosol	48.85	57.66
GSMUA_Achr3P23000_001	Banana	cytosol	46.56	57.55
GSMUA_Achr9P30020_001	Banana	cytosol	49.62	57.52
KRH55477	Soybean	cytosol	51.91	57.14
GSMUA_Achr7P27110_001	Banana	cytosol	50.38	56.9
KXG33526	Sorghum	cytosol	44.27	56.86
GSMUA_Achr8P01460_001	Banana	cytosol	48.09	56.25
TraesCS3D01G316100.1	Wheat	cytosol	47.33	55.86
KXG25648	Sorghum	cytosol	46.56	55.45
Zm00001d043258_P001	Maize	cytosol	38.93	54.84
Zm00001d031419_P001	Maize	cytosol	45.8	54.55
Os06t0683400-02	Rice	cytosol	49.62	52.0
GSMUA_Achr5P26360_001	Banana	cytosol	46.56	51.69
TraesCS7A01G450400.1	Wheat	cytosol	48.85	51.2
VIT_19s0014g04650.t01	Wine grape	cytosol	57.25	50.0
TraesCS7B01G350200.1	Wheat	cytosol	48.85	49.61
EER88832	Sorghum	cytosol	48.09	48.46
TraesCS7D01G439800.1	Wheat	cytosol	48.85	47.76
HORVU3Hr1G077070.1	Barley	cytosol	47.33	46.97
Zm00001d014491_P001	Maize	cytosol	47.33	46.97
CDX80031	Canola	cytosol	38.93	46.79
CDX83356	Canola	cytosol	47.33	46.27
CDX95707	Canola	cytosol	47.33	46.27
CDY27313	Canola	cytosol	44.27	43.61
CDY61726	Canola	cytosol	44.27	43.61
CDY13397	Canola	cytosol	43.51	42.86
CDX89262	Canola	cytosol, peroxisome, plastid	80.92	38.97
CDY41540	Canola	cytosol	38.17	34.25
HORVU7Hr1G101740.2	Barley	cytosol, plastid	38.17	31.06

Protein Annotations

EnsemblPlants:CDY48640	EnsemblPlantsGene:GSBRNA2T00091416001	Gene3D:1.10.238.10	GO:A0A078ICM5	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR44180
PANTHER:PTHR44180:SF1	PFAM:PF13833	PFscan:PS50222	ProteinID:CDY48640	ProteinID:CDY48640.1	ScanProsite:PS00018
SEG:seg	SUPFAM:SSF47473	UniParc:UPI0004EE3332	UniProt:A0A078ICM5	MapMan:35.1	:

Description

BnaCnng16590DBnaCnng16590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICM5]

Coordinates

chrLK032784:-:19564..20148

Molecular Weight (calculated)

14771.5 Da

IEP (calculated)

4.270

GRAVY (calculated)

-0.378

Length

131 amino acids

Sequence
(BLAST)

001: MASPKSSTRP TQQNPEPTFH DFFPTMAGTL GGEGLIDELC KGFELLMDRD RGVITFESLR RNASAVLGLG DLTDDDVRCM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEAI EEEFCDRTHR R

Best Arabidopsis Sequence Match ( AT5G54490.1 )
(BLAST)

001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH

Arabidopsis Description

PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.