Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80031 | Canola | cytosol | 58.9 | 78.9 |
| CDY27313 | Canola | cytosol | 66.44 | 72.93 |
| CDY13397 | Canola | cytosol | 65.75 | 72.18 |
| CDY61726 | Canola | cytosol | 65.75 | 72.18 |
| AT2G46600.1 | Thale cress | cytosol | 65.07 | 70.37 |
| CDX83356 | Canola | cytosol | 63.7 | 69.4 |
| CDX95707 | Canola | cytosol | 61.64 | 67.16 |
| KRH47865 | Soybean | cytosol | 51.37 | 60.0 |
| KRH06431 | Soybean | cytosol | 50.68 | 59.2 |
| VIT_15s0046g00070.t01 | Wine grape | cytosol | 51.37 | 59.06 |
| PGSC0003DMT400048609 | Potato | cytosol | 49.32 | 59.02 |
| Solyc10g009340.1.1 | Tomato | cytosol | 49.32 | 58.54 |
| GSMUA_Achr1P03980_001 | Banana | cytosol | 46.58 | 54.84 |
| KRH68937 | Soybean | cytosol | 47.26 | 54.76 |
| KRG97213 | Soybean | cytosol | 46.58 | 53.97 |
| TraesCS6A01G065900.1 | Wheat | cytosol | 42.47 | 49.6 |
| TraesCS6B01G088900.1 | Wheat | cytosol | 42.47 | 49.6 |
| TraesCSU01G118100.1 | Wheat | cytosol | 41.1 | 47.62 |
| HORVU6Hr1G011970.2 | Barley | cytosol | 41.78 | 44.85 |
| Os02t0122600-00 | Rice | cytosol | 41.1 | 40.82 |
| CDY29293 | Canola | cytosol | 34.93 | 40.16 |
| CDY48640 | Canola | cytosol | 34.25 | 38.17 |
| CDY28767 | Canola | cytosol | 34.25 | 38.17 |
| CDY61745 | Canola | cytosol | 32.88 | 36.64 |
| CDY42456 | Canola | cytosol | 32.88 | 36.64 |
| Zm00001d053926_P001 | Maize | cytosol | 37.67 | 32.93 |
| CDX89262 | Canola | cytosol, peroxisome, plastid | 36.99 | 19.85 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | GO:A0A078HSL6 | UniProt:A0A078HSL6 | EnsemblPlants:CDY41540 | ProteinID:CDY41540 |
| ProteinID:CDY41540.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00073168001 | InterPro:IPR002048 |
| PFAM:PF13833 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR44180 | PANTHER:PTHR44180:SF7 | SUPFAM:SSF47473 |
| TMHMM:TMhelix | UniParc:UPI0004EDE071 | SEG:seg | : | : | : |
Description
BnaC04g00820DBnaC04g00820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSL6]
Coordinates
chrLK032500:+:30911..31351
Molecular Weight (calculated)
16370.9 Da
IEP (calculated)
4.068
GRAVY (calculated)
-0.043
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPPSKKSFV LEPSMETKYE DMLPIMAEKL DVDEFVSELC KCFSLLADPG RDLITAESLR RSSGILGIEG MSKEDAESMV REGDLDGDGA LNQTEFCVLM
101: VRLSPEMMKD ADLAGESNQP RTLNMKNLFL VFSLFFILLL INVSEY
101: VRLSPEMMKD ADLAGESNQP RTLNMKNLFL VFSLFFILLL INVSEY
001: MEPTEKSMLL ETTSTTKMET KYEDMLPVMA EKMDVEEFVS ELCKGFSLLA DPERHLITAE SLRRNSGILG IEGMSKEDAQ GMVREGDLDG DGALNQTEFC
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP
Arabidopsis Description
KICCalcium-binding protein KIC [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.