Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79002 | Canola | cytosol | 91.62 | 93.09 |
| CDX94006 | Canola | cytosol | 85.34 | 87.63 |
| AT4G20780.1 | Thale cress | cytosol | 85.86 | 85.86 |
| CDY31433 | Canola | cytosol, plastid | 80.63 | 83.7 |
| CDX76451 | Canola | cytosol, plastid | 80.1 | 83.15 |
| CDX94789 | Canola | cytosol | 70.16 | 73.63 |
| CDY49013 | Canola | cytosol | 69.11 | 72.53 |
| CDY14927 | Canola | cytosol | 65.97 | 69.23 |
| CDX96968 | Canola | cytosol | 66.49 | 65.8 |
| CDX98672 | Canola | cytosol | 82.72 | 62.2 |
| VIT_08s0056g00290.t01 | Wine grape | cytosol, mitochondrion | 59.69 | 59.38 |
| Solyc10g074740.1.1 | Tomato | cytosol, plastid | 61.78 | 59.3 |
| PGSC0003DMT400071219 | Potato | cytosol, plastid | 61.26 | 58.79 |
| KRH40630 | Soybean | mitochondrion | 53.93 | 56.28 |
| GSMUA_Achr8P01570_001 | Banana | cytosol | 52.36 | 54.05 |
| Zm00001d029028_P001 | Maize | plastid | 52.88 | 53.72 |
| Zm00001d047535_P001 | Maize | plastid | 51.31 | 52.41 |
| EER92319 | Sorghum | cytosol | 51.31 | 52.13 |
| KXG39446 | Sorghum | plastid | 51.83 | 51.83 |
| TraesCS7D01G302700.1 | Wheat | plastid | 52.36 | 51.02 |
| Os03t0331700-02 | Rice | plasma membrane | 50.26 | 50.53 |
| TraesCS7A01G306000.1 | Wheat | plastid | 51.83 | 50.51 |
| HORVU7Hr1G072770.1 | Barley | plastid | 52.36 | 50.51 |
| TraesCS7B01G206200.1 | Wheat | plastid | 52.36 | 50.51 |
| TraesCS4D01G174400.1 | Wheat | plastid | 49.74 | 50.26 |
| EER97743 | Sorghum | plastid | 52.36 | 50.25 |
| Os08t0144100-01 | Rice | plasma membrane | 51.31 | 50.0 |
| Zm00001d022430_P001 | Maize | cytosol, plastid | 51.83 | 49.5 |
| Zm00001d007181_P001 | Maize | plastid | 52.36 | 49.26 |
| TraesCS4A01G132300.1 | Wheat | plastid | 49.21 | 49.21 |
| TraesCS4B01G172400.1 | Wheat | plastid | 48.69 | 49.21 |
| HORVU4Hr1G050990.1 | Barley | plastid | 49.21 | 48.7 |
| TraesCS2B01G120900.1 | Wheat | plastid | 48.69 | 48.69 |
| TraesCS2A01G103600.1 | Wheat | plastid | 48.69 | 48.69 |
| Os07t0681400-01 | Rice | cytosol | 49.74 | 48.22 |
| TraesCS2D01G103400.1 | Wheat | plastid | 48.17 | 48.17 |
| TraesCS5D01G348900.1 | Wheat | cytosol | 40.31 | 47.24 |
| TraesCS5A01G343000.1 | Wheat | cytosol, mitochondrion | 40.31 | 46.95 |
| TraesCS5B01G342800.1 | Wheat | cytosol | 39.79 | 46.91 |
| HORVU5Hr1G085800.2 | Barley | cytosol | 40.31 | 44.0 |
| CDY63788 | Canola | cytosol | 32.46 | 41.06 |
| CDX86544 | Canola | cytosol | 32.46 | 41.06 |
| CDX90890 | Canola | cytosol | 31.94 | 39.61 |
| Os05t0312600-01 | Rice | cytosol, plastid | 40.31 | 39.09 |
| CDY60818 | Canola | cytosol | 29.84 | 38.26 |
| CDY22119 | Canola | cytosol | 29.84 | 37.5 |
| CDY07993 | Canola | cytosol | 29.84 | 37.25 |
| CDX74043 | Canola | cytosol | 29.84 | 37.25 |
| CDY21953 | Canola | cytosol | 29.32 | 36.84 |
| CDY39714 | Canola | cytosol | 28.8 | 36.18 |
| CDY33702 | Canola | cytosol | 28.27 | 35.53 |
| CDX99691 | Canola | cytosol | 28.8 | 34.81 |
| CDY17950 | Canola | cytosol | 29.84 | 34.34 |
| CDY27652 | Canola | cytosol | 28.27 | 33.96 |
| CDY55679 | Canola | cytosol | 25.13 | 31.37 |
| CDX96150 | Canola | cytosol | 24.61 | 30.72 |
| CDX67796 | Canola | vacuole | 32.46 | 30.54 |
| CDX98375 | Canola | endoplasmic reticulum | 32.46 | 30.39 |
| CDX84967 | Canola | cytosol | 29.84 | 30.16 |
| CDY30399 | Canola | extracellular | 32.98 | 30.0 |
| CDY72611 | Canola | extracellular, vacuole | 31.41 | 30.0 |
| CDY36129 | Canola | cytosol | 29.32 | 29.95 |
| CDY23356 | Canola | vacuole | 32.98 | 29.86 |
| CDY27574 | Canola | cytosol | 29.84 | 29.84 |
| CDY06002 | Canola | extracellular, vacuole | 30.89 | 29.8 |
| CDX72996 | Canola | cytosol | 24.61 | 29.56 |
| CDX96488 | Canola | cytosol | 24.61 | 29.56 |
| CDX83488 | Canola | extracellular | 32.98 | 29.44 |
| CDY03874 | Canola | cytosol | 28.27 | 29.35 |
| CDY40786 | Canola | cytosol | 28.27 | 29.35 |
| CDY70127 | Canola | cytosol | 25.13 | 28.74 |
| CDX96729 | Canola | cytosol | 26.18 | 28.74 |
| CDX83860 | Canola | cytosol | 26.18 | 28.25 |
| CDY66855 | Canola | plastid | 27.75 | 28.04 |
| CDY37233 | Canola | plastid | 27.75 | 28.04 |
| CDY19196 | Canola | cytosol | 25.65 | 27.68 |
| CDY44217 | Canola | endoplasmic reticulum, golgi | 33.51 | 22.7 |
| CDY60169 | Canola | cytosol, plastid | 23.56 | 21.63 |
| CDY23852 | Canola | cytosol, mitochondrion, plastid | 23.56 | 21.13 |
| CDY00910 | Canola | cytosol, plastid | 24.08 | 21.1 |
| CDY06925 | Canola | cytosol, mitochondrion, plastid | 23.56 | 20.74 |
| CDY24421 | Canola | endoplasmic reticulum, golgi | 29.32 | 20.66 |
| CDX79938 | Canola | cytosol, mitochondrion, plastid | 23.04 | 20.66 |
| CDY14768 | Canola | cytosol, mitochondrion, plastid | 22.51 | 19.82 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | GO:A0A078D6A5 | EnsemblPlants:CDX82773 | ProteinID:CDX82773 | ProteinID:CDX82773.1 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| EnsemblPlantsGene:GSBRNA2T00138094001 | InterPro:IPR002048 | PFAM:PF13405 | PFAM:PF13499 | ScanProsite:PS00018 | PFscan:PS50222 |
| PANTHER:PTHR45003 | PANTHER:PTHR45003:SF2 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI0004EF1817 | SEG:seg |
Description
BnaC01g12230D
Coordinates
chrLK031830:-:90374..90949
Molecular Weight (calculated)
20877.1 Da
IEP (calculated)
4.071
GRAVY (calculated)
-0.427
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MESNGDNKRV NIQSSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVDEL SQALSRLGLN ADLSDLLSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: AGDDDDDNDD DPSSAAADES ALAGAFKVFD ENGDGFISAR ELQAVLKKLG LPEGGEMERV EKMIVSVDRN KDGRVDFFEF KNMMSTVVIP S
101: AGDDDDDNDD DPSSAAADES ALAGAFKVFD ENGDGFISAR ELQAVLKKLG LPEGGEMERV EKMIVSVDRN KDGRVDFFEF KNMMSTVVIP S
001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
Arabidopsis Description
CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.