Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G065900.1 | |
| TraesCS6B01G088900.1 | |
| TraesCSU01G118100.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G20780.1 | TraesCS6A01G065900.1 | AT2G46600.1 | 19720824 |
| AT4G20780.1 | TraesCS6B01G088900.1 | AT2G46600.1 | 19720824 |
| AT4G20780.1 | TraesCSU01G118100.1 | AT2G46600.1 | 19720824 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G174400.1 | Wheat | plastid | 96.83 | 96.83 |
| TraesCS4A01G132300.1 | Wheat | plastid | 97.35 | 96.34 |
| HORVU4Hr1G050990.1 | Barley | plastid | 97.88 | 95.85 |
| Os03t0331700-02 | Rice | plasma membrane | 85.71 | 85.26 |
| KXG39446 | Sorghum | plastid | 83.6 | 82.72 |
| Zm00001d029028_P001 | Maize | plastid | 81.48 | 81.91 |
| EER92319 | Sorghum | cytosol | 79.37 | 79.79 |
| Zm00001d047535_P001 | Maize | plastid | 77.25 | 78.07 |
| TraesCS2B01G120900.1 | Wheat | plastid | 70.37 | 69.63 |
| GSMUA_Achr8P01570_001 | Banana | cytosol | 66.67 | 68.11 |
| TraesCS7B01G206200.1 | Wheat | plastid | 67.72 | 64.65 |
| AT5G44460.1 | Thale cress | cytosol | 49.74 | 51.93 |
| CDX94006 | Canola | cytosol | 50.79 | 51.61 |
| KRH40630 | Soybean | mitochondrion | 49.74 | 51.37 |
| Bra033745.1-P | Field mustard | cytosol | 49.21 | 51.1 |
| CDX94789 | Canola | cytosol | 48.68 | 50.55 |
| CDY14927 | Canola | cytosol | 48.68 | 50.55 |
| CDY49013 | Canola | cytosol | 48.68 | 50.55 |
| Bra039511.1-P | Field mustard | cytosol | 48.68 | 50.55 |
| CDY31433 | Canola | cytosol, plastid | 49.21 | 50.54 |
| CDX79002 | Canola | cytosol | 50.26 | 50.53 |
| Bra013470.1-P | Field mustard | cytosol | 50.26 | 50.53 |
| CDX76451 | Canola | cytosol, plastid | 48.68 | 50.0 |
| TraesCS5B01G342800.1 | Wheat | cytosol | 42.86 | 50.0 |
| Bra020916.1-P | Field mustard | cytosol, plastid | 48.68 | 50.0 |
| AT4G20780.1 | Thale cress | cytosol | 50.26 | 49.74 |
| VIT_08s0056g00290.t01 | Wine grape | cytosol, mitochondrion | 50.26 | 49.48 |
| Solyc10g074740.1.1 | Tomato | cytosol, plastid | 51.85 | 49.25 |
| CDX82773 | Canola | cytosol | 49.21 | 48.69 |
| PGSC0003DMT400071219 | Potato | cytosol, plastid | 50.79 | 48.24 |
| CDX96968 | Canola | cytosol | 48.15 | 47.15 |
| TraesCS5B01G134200.1 | Wheat | cytosol | 19.58 | 41.11 |
| CDX98672 | Canola | cytosol | 50.79 | 37.8 |
| Bra038801.1-P | Field mustard | cytosol | 50.79 | 36.78 |
| TraesCS2B01G367500.1 | Wheat | plastid | 39.68 | 35.05 |
| TraesCS1B01G148000.1 | Wheat | cytosol | 27.51 | 30.23 |
| TraesCS3B01G536200.1 | Wheat | cytosol, plastid | 30.16 | 30.0 |
| TraesCS3B01G538300.1 | Wheat | cytosol, plastid | 30.16 | 30.0 |
| TraesCS1B01G250900.1 | Wheat | mitochondrion | 28.04 | 28.04 |
| TraesCS7B01G034000.1 | Wheat | endoplasmic reticulum | 33.86 | 27.35 |
| TraesCS3B01G045500.1 | Wheat | cytosol | 26.98 | 27.27 |
| TraesCS5B01G237500.1 | Wheat | mitochondrion | 22.75 | 23.5 |
| TraesCS3B01G536600.1 | Wheat | nucleus, plastid | 23.28 | 22.34 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G172400.1 | EnsemblPlantsGene:TraesCS4B01G172400 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR45003 | PANTHER:PTHR45003:SF1 |
| PFAM:PF13405 | PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 |
| SUPFAM:SSF47473 | TIGR:cd00051 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:377374690..377375259
Molecular Weight (calculated)
20314.0 Da
IEP (calculated)
4.192
GRAVY (calculated)
-0.271
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTAPAPLKP SLSKKPSPSF RLRNGSLNAL RLRRVFDLFD RNGDGEITLD EMAAALDTLG LGADRASLEA TVGAYIPAGA AGLGFEDFEG LHRALGDALF
101: GPITEEEPGK EGEGEDEDMK EAFRVFDENG DGFISASELQ AVLKKLGLAE ARNLAAVQEM ICNVDRDRDG QVDFGEFKCM MQGITVWGA
101: GPITEEEPGK EGEGEDEDMK EAFRVFDENG DGFISASELQ AVLKKLGLAE ARNLAAVQEM ICNVDRDRDG QVDFGEFKCM MQGITVWGA
001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
Arabidopsis Description
CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.