Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- plastid 4
- cytosol 2
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0122600-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G20780.1 | Os02t0122600-00 | AT2G46600.1 | 19720824 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029028_P001 | Maize | plastid | 88.42 | 89.36 |
| TraesCS4A01G132300.1 | Wheat | plastid | 86.84 | 86.39 |
| KXG39446 | Sorghum | plastid | 86.84 | 86.39 |
| TraesCS4B01G172400.1 | Wheat | plastid | 85.26 | 85.71 |
| TraesCS4D01G174400.1 | Wheat | plastid | 84.74 | 85.19 |
| HORVU4Hr1G050990.1 | Barley | plastid | 86.32 | 84.97 |
| EER92319 | Sorghum | cytosol | 83.68 | 84.57 |
| Zm00001d047535_P001 | Maize | plastid | 79.47 | 80.75 |
| Os08t0144100-01 | Rice | plasma membrane | 75.26 | 72.96 |
| Os07t0681400-01 | Rice | cytosol | 74.74 | 72.08 |
| GSMUA_Achr8P01570_001 | Banana | cytosol | 66.32 | 68.11 |
| AT5G44460.1 | Thale cress | cytosol | 53.16 | 55.8 |
| Bra033745.1-P | Field mustard | cytosol | 52.11 | 54.4 |
| CDY49013 | Canola | cytosol | 51.58 | 53.85 |
| CDX94789 | Canola | cytosol | 51.58 | 53.85 |
| Bra039511.1-P | Field mustard | cytosol | 51.05 | 53.3 |
| CDY14927 | Canola | cytosol | 51.05 | 53.3 |
| CDX94006 | Canola | cytosol | 51.58 | 52.69 |
| CDX79002 | Canola | cytosol | 51.58 | 52.13 |
| Bra013470.1-P | Field mustard | cytosol | 51.58 | 52.13 |
| Solyc10g074740.1.1 | Tomato | cytosol, plastid | 54.21 | 51.76 |
| CDY31433 | Canola | cytosol, plastid | 50.0 | 51.63 |
| AT4G20780.1 | Thale cress | cytosol | 51.58 | 51.31 |
| Bra020916.1-P | Field mustard | cytosol, plastid | 49.47 | 51.09 |
| CDX76451 | Canola | cytosol, plastid | 49.47 | 51.09 |
| PGSC0003DMT400071219 | Potato | cytosol, plastid | 53.16 | 50.75 |
| VIT_08s0056g00290.t01 | Wine grape | cytosol, mitochondrion | 51.05 | 50.52 |
| KRH40630 | Soybean | mitochondrion | 48.42 | 50.27 |
| CDX82773 | Canola | cytosol | 50.53 | 50.26 |
| CDX96968 | Canola | cytosol | 50.53 | 49.74 |
| Os05t0312600-01 | Rice | cytosol, plastid | 48.42 | 46.7 |
| Os12t0228800-01 | Rice | cytosol | 34.74 | 39.29 |
| CDX98672 | Canola | cytosol | 51.58 | 38.58 |
| Bra038801.1-P | Field mustard | cytosol | 51.58 | 37.55 |
| Os04t0492800-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 36.32 | 35.2 |
| Os01t0949500-01 | Rice | plasma membrane | 30.53 | 31.35 |
| Os01t0135700-01 | Rice | plasma membrane | 27.89 | 29.28 |
| Os05t0223000-01 | Rice | plasma membrane | 28.95 | 29.1 |
| Os09t0458700-01 | Rice | cytosol, mitochondrion | 26.32 | 27.03 |
| Os05t0380900-01 | Rice | cytosol, mitochondrion | 28.42 | 26.87 |
| Os06t0172200-02 | Rice | plasma membrane | 31.05 | 25.0 |
| Os11t0141400-01 | Rice | cytosol | 24.21 | 24.47 |
| Os01t0949300-01 | Rice | plasma membrane | 23.68 | 22.06 |
| Os12t0138050-00 | Rice | plastid | 24.74 | 19.75 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | EntrezGene:4332731 | ProteinID:ABF95765.1 | ProteinID:ABF95766.1 | EMBL:AK109470 |
| EMBL:AK109541 | ProteinID:BAF11926.1 | ProteinID:BAS84035.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0046872 | InterPro:IPR002048 | EnsemblPlantsGene:Os03g0331700 |
| EnsemblPlants:Os03t0331700-02 | PFAM:PF13405 | PFAM:PF13499 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR45003 |
| PANTHER:PTHR45003:SF1 | UniProt:Q10LX4 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI0000DB460F | RefSeq:XP_015627778.1 |
| SEG:seg | : | : | : | : | : |
Description
CALMODULIN-LIKE PROTEIN 27Similar to cDNA clone:002-120-A09, full insert sequence. (Os03t0331700-02)
Coordinates
chr3:-:12223921..12226096
Molecular Weight (calculated)
20345.0 Da
IEP (calculated)
4.198
GRAVY (calculated)
-0.258
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAGVAAKP SLSRKPSPSF RLRNGSLNAL RLRRVFDLFD RNGDGEITLD EMASALDALG LGADRAGLEA TVGGYIPAGA AGLRFGDFEA LHRALGDALF
101: GPVEEEEPGK QGEDDDEGDM KEAFRVFDED GDGFISAAEL QAVLKKLGLP EARNLATVQE MICNVDRDCD GRVDFGEFKC MMQGITVWGA
101: GPVEEEEPGK QGEDDDEGDM KEAFRVFDED GDGFISAAEL QAVLKKLGLP EARNLATVQE MICNVDRDCD GRVDFGEFKC MMQGITVWGA
001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
Arabidopsis Description
CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.