Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G132700.1 | Wheat | endoplasmic reticulum | 73.73 | 75.32 |
| TraesCS7B01G034000.1 | Wheat | endoplasmic reticulum | 73.73 | 74.36 |
| Zm00001d037477_P001 | Maize | endoplasmic reticulum, vacuole | 72.03 | 69.96 |
| HORVU7Hr1G027770.3 | Barley | endoplasmic reticulum | 67.8 | 69.87 |
| EER87935 | Sorghum | endoplasmic reticulum, vacuole | 69.92 | 67.35 |
| TraesCS7A01G133200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 73.73 | 51.48 |
| GSMUA_Achr6P35120_001 | Banana | endoplasmic reticulum | 44.92 | 48.85 |
| Os12t0228800-01 | Rice | cytosol | 31.36 | 44.05 |
| Os04t0492800-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 36.02 | 43.37 |
| PGSC0003DMT400086334 | Potato | cytosol | 31.36 | 41.81 |
| Solyc07g007950.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 35.59 | 37.84 |
| KRH20147 | Soybean | extracellular | 36.44 | 37.55 |
| KRH03663 | Soybean | endoplasmic reticulum, extracellular | 35.59 | 36.68 |
| Os01t0949500-01 | Rice | plasma membrane | 28.39 | 36.22 |
| PGSC0003DMT400079359 | Potato | extracellular, golgi | 34.75 | 35.04 |
| Os01t0135700-01 | Rice | plasma membrane | 26.69 | 34.81 |
| Os05t0312600-01 | Rice | cytosol, plastid | 27.97 | 33.5 |
| VIT_11s0016g05740.t01 | Wine grape | extracellular, golgi | 36.02 | 33.2 |
| Os05t0380900-01 | Rice | cytosol, mitochondrion | 27.54 | 32.34 |
| Os05t0223000-01 | Rice | plasma membrane | 25.85 | 32.28 |
| Os08t0144100-01 | Rice | plasma membrane | 25.85 | 31.12 |
| Os03t0331700-02 | Rice | plasma membrane | 25.0 | 31.05 |
| Os07t0681400-01 | Rice | cytosol | 25.0 | 29.95 |
| Os11t0141400-01 | Rice | cytosol | 22.88 | 28.72 |
| Os09t0458700-01 | Rice | cytosol, mitochondrion | 22.03 | 28.11 |
| Os01t0949300-01 | Rice | plasma membrane | 21.61 | 25.0 |
| Os12t0138050-00 | Rice | plastid | 24.58 | 24.37 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | EntrezGene:4340272 | EMBL:AK070725 | EMBL:AK105920 | ProteinID:BAD72274.1 |
| ProteinID:BAF18854.1 | ProteinID:BAS96390.1 | ncoils:Coil | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0046872 | InterPro:IPR002048 | EnsemblPlantsGene:Os06g0172200 |
| EnsemblPlants:Os06t0172200-02 | PFAM:PF13499 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR10891 | PANTHER:PTHR10891:SF703 |
| UniProt:Q5SND2 | SMART:SM00054 | SUPFAM:SSF47473 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000046D469 |
| RefSeq:XP_015641327.1 | SEG:seg | : | : | : | : |
Description
CALMODULIN-LIKE PROTEIN 30EF-Hand type domain containing protein. (Os06t0172200-02)
Coordinates
chr6:+:3649517..3650686
Molecular Weight (calculated)
25746.2 Da
IEP (calculated)
4.327
GRAVY (calculated)
-0.375
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPLLLLFLL GGLCALFSLA SSSPATKKCG DAKKRREEEG EEVVVVAKKR PEEEPRRPDP DADLGIVFST FDHDGDGFIT AAELEESLKR LGIAVSSAAE
101: AAALVARVDA NSDGLIDIHE FRELYDSIPK RRKSHQQHPL PSTAAADEEA AAADEEYEAE EEERDLREAF DVFDGNKDGL ISAEELGTVL ESLGLRQHGG
201: RPAVAECRDM IRLVDSDGDG MVSFEEFKRM MTVVKA
101: AAALVARVDA NSDGLIDIHE FRELYDSIPK RRKSHQQHPL PSTAAADEEA AAADEEYEAE EEERDLREAF DVFDGNKDGL ISAEELGTVL ESLGLRQHGG
201: RPAVAECRDM IRLVDSDGDG MVSFEEFKRM MTVVKA
001: MDQAELARIF QMFDRNGDGK ITKQELNDSL ENLGIYIPDK DLVQMIEKID LNGDGYVDIE EFGGLYQTIM EERDEEEDMR EAFNVFDQNR DGFITVEELR
101: SVLASLGLKQ GRTLEDCKRM ISKVDVDGDG MVNFKEFKQM MKGGGFAALG SNL
101: SVLASLGLKQ GRTLEDCKRM ISKVDVDGDG MVNFKEFKQM MKGGGFAALG SNL
Arabidopsis Description
CML3CML3 [Source:UniProtKB/TrEMBL;Acc:A0A178V7U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.