Factsheet for VIT_11s0016g05740.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

nucleus 1
plastid 2
extracellular 4
plasma membrane 4
endoplasmic reticulum 3
vacuole 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086334	Potato	cytosol	41.02	59.32
Solyc07g007950.1.1	Tomato	endoplasmic reticulum, extracellular, golgi	50.0	57.66
VIT_07s0289g00040.t01	Wine grape	cytosol	33.98	56.49
VIT_07s0141g00300.t01	Wine grape	cytosol	33.98	56.49
PGSC0003DMT400079359	Potato	extracellular, golgi	50.39	55.13
KRH03663	Soybean	endoplasmic reticulum, extracellular	47.27	52.84
KRH20147	Soybean	extracellular	47.27	52.84
VIT_05s0102g00450.t01	Wine grape	endoplasmic reticulum, golgi	36.72	43.93
VIT_14s0006g01400.t01	Wine grape	cytosol	24.61	42.0
GSMUA_Achr6P35120_001	Banana	endoplasmic reticulum	35.16	41.47
TraesCS7D01G132700.1	Wheat	endoplasmic reticulum	35.55	39.39
TraesCS7B01G034000.1	Wheat	endoplasmic reticulum	35.55	38.89
Os06t0172200-02	Rice	plasma membrane	33.2	36.02
HORVU7Hr1G027770.3	Barley	endoplasmic reticulum	31.64	35.37
Zm00001d037477_P001	Maize	endoplasmic reticulum, vacuole	33.2	34.98
EER87935	Sorghum	endoplasmic reticulum, vacuole	32.81	34.29
VIT_08s0056g00290.t01	Wine grape	cytosol, mitochondrion	24.22	32.29
VIT_03s0063g00530.t01	Wine grape	cytosol	22.66	31.87
VIT_15s0048g00790.t01	Wine grape	mitochondrion	23.44	29.41
TraesCS7A01G133200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	37.5	28.4
VIT_08s0007g05790.t01	Wine grape	mitochondrion, plastid	23.44	27.03

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100245811	wikigene:100245811	MapMan:35.1	ProteinID:CCB51604	ProteinID:CCB51604.1
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	UniProt:F6HHA8	EMBL:FN595756	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR002048
EntrezGene:LOC100245811	wikigene:LOC100245811	PFAM:PF13499	PFAM:PF13833	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR10891	PANTHER:PTHR10891:SF703	SMART:SM00054	SUPFAM:SSF47473	TIGR:TC69011	TIGR:TC69991
TMHMM:TMhelix	UniParc:UPI0002108D96	ArrayExpress:VIT_11s0016g05740	EnsemblPlantsGene:VIT_11s0016g05740	EnsemblPlants:VIT_11s0016g05740.t01	unigene:Vvi.1515
RefSeq:XP_002285404	RefSeq:XP_002285404.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:-:5232257..5233563

Molecular Weight (calculated)

29011.0 Da

IEP (calculated)

4.497

GRAVY (calculated)

-0.191

Length

256 amino acids

Sequence
(BLAST)

001: MCYQMLFTGL FLFDFYFLRL LQSRGLWDQR IHQTTQMVII TILILAVLFI AGLINLFFCF PTKRFYSWFQ SLFSSKYSPI SENCSIQAPK KGLSAEKKEE
101: LRRVFATFDK NSDGFITKQE LRDSLKNIGI LLSMKDVEEM VERVDANGDG LIDPDEFCEL YESMGGGGGD GEREEGGEGE DMKEAFDVFD GDGDGLISVE
201: ELRLVLSSLG LKEGKRLEDC KEMIRKVDMD GDGMVNFEEF KKMMKAGGKR LLSASS

Best Arabidopsis Sequence Match ( AT2G43290.1 )
(BLAST)

001: MVRIFLLYNI LNSFLLSLVP KKLRTLFPLS WFDKTLHKNS PPSPSTMLPS PSSSSAPTKR IDPSELKRVF QMFDKNGDGR ITKEELNDSL ENLGIYIPDK
101: DLTQMIHKID ANGDGCVDID EFESLYSSIV DEHHNDGETE EEDMKDAFNV FDQDGDGFIT VEELKSVMAS LGLKQGKTLD GCKKMIMQVD ADGDGRVNYK
201: EFLQMMKGGG FSSSN

Arabidopsis Description

CML5MSS3 [Source:UniProtKB/TrEMBL;Acc:A0A178VP84]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.