Factsheet for VIT_08s0056g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_15s0046g00070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20780.1	VIT_15s0046g00070.t01	AT2G46600.1	19720824

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G44460.1	Thale cress	cytosol	59.38	62.98
AT4G20780.1	Thale cress	cytosol	62.5	62.83
KRH40630	Soybean	mitochondrion	58.85	61.75
CDX94006	Canola	cytosol	59.38	61.29
CDX79002	Canola	cytosol	59.9	61.17
Bra013470.1-P	Field mustard	cytosol	59.9	61.17
Bra033745.1-P	Field mustard	cytosol	57.81	60.99
CDX94789	Canola	cytosol	57.81	60.99
CDY49013	Canola	cytosol	57.29	60.44
PGSC0003DMT400071219	Potato	cytosol, plastid	62.5	60.3
CDX82773	Canola	cytosol	59.38	59.69
Solyc10g074740.1.1	Tomato	cytosol, plastid	61.46	59.3
Bra039511.1-P	Field mustard	cytosol	55.73	58.79
CDY14927	Canola	cytosol	55.73	58.79
Bra020916.1-P	Field mustard	cytosol, plastid	55.73	58.15
CDX76451	Canola	cytosol, plastid	55.73	58.15
CDY31433	Canola	cytosol, plastid	55.73	58.15
CDX96968	Canola	cytosol	56.25	55.96
GSMUA_Achr8P01570_001	Banana	cytosol	52.08	54.05
Zm00001d047535_P001	Maize	plastid	52.6	54.01
Zm00001d029028_P001	Maize	plastid	50.52	51.6
Os03t0331700-02	Rice	plasma membrane	50.52	51.05
TraesCS7D01G302700.1	Wheat	plastid	52.08	51.02
TraesCS7A01G306000.1	Wheat	plastid	52.08	51.02
EER92319	Sorghum	cytosol	49.48	50.53
TraesCS7B01G206200.1	Wheat	plastid	52.08	50.51
TraesCS4D01G174400.1	Wheat	plastid	49.48	50.26
TraesCS4B01G172400.1	Wheat	plastid	49.48	50.26
KXG39446	Sorghum	plastid	50.0	50.26
HORVU7Hr1G072770.1	Barley	plastid	51.56	50.0
TraesCS4A01G132300.1	Wheat	plastid	49.48	49.74
Os08t0144100-01	Rice	plasma membrane	50.52	49.49
HORVU4Hr1G050990.1	Barley	plastid	49.48	49.22
TraesCS2B01G120900.1	Wheat	plastid	48.96	49.21
TraesCS2A01G103600.1	Wheat	plastid	48.96	49.21
TraesCS2D01G103400.1	Wheat	plastid	48.44	48.69
EER97743	Sorghum	plastid	49.48	47.74
Os07t0681400-01	Rice	cytosol	48.96	47.72
Zm00001d022430_P001	Maize	cytosol, plastid	49.48	47.5
Zm00001d007181_P001	Maize	plastid	49.48	46.8
TraesCS5D01G348900.1	Wheat	cytosol	38.54	45.4
TraesCS5A01G343000.1	Wheat	cytosol, mitochondrion	38.54	45.12
TraesCS5B01G342800.1	Wheat	cytosol	38.02	45.06
CDX98672	Canola	cytosol	58.85	44.49
Bra038801.1-P	Field mustard	cytosol	58.85	43.3
HORVU5Hr1G085800.2	Barley	cytosol	38.54	42.29
VIT_07s0141g00300.t01	Wine grape	cytosol	32.29	40.26
VIT_07s0289g00040.t01	Wine grape	cytosol	32.29	40.26
Os05t0312600-01	Rice	cytosol, plastid	40.1	39.09
VIT_14s0006g01400.t01	Wine grape	cytosol	26.56	34.0
VIT_05s0102g00450.t01	Wine grape	endoplasmic reticulum, golgi	33.33	29.91
VIT_15s0048g00790.t01	Wine grape	mitochondrion	28.65	26.96
VIT_03s0063g00530.t01	Wine grape	cytosol	25.0	26.37
VIT_11s0016g05740.t01	Wine grape	extracellular, golgi	32.29	24.22
VIT_08s0007g05790.t01	Wine grape	mitochondrion, plastid	22.4	19.37

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100251912	wikigene:100251912	MapMan:35.1	UniProt:C5DB59	ProteinID:CAQ58618
ProteinID:CAQ58618.1	ProteinID:CCB55942	ProteinID:CCB55942.1	EMBL:CU914151	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	EMBL:FN595995	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048
EntrezGene:LOC100251912	wikigene:LOC100251912	PFAM:PF13405	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR45003	PANTHER:PTHR45003:SF2	SMART:SM00054	SUPFAM:SSF47473	TIGR:TC65763	UniParc:UPI00015CB3F0
ArrayExpress:VIT_08s0056g00290	EnsemblPlantsGene:VIT_08s0056g00290	EnsemblPlants:VIT_08s0056g00290.t01	RefSeq:XP_002267554	RefSeq:XP_002267554.2	RefSeq:XP_010653101.1
SEG:seg	:	:	:	:	:

Description

Calcium binding [Source:UniProtKB/TrEMBL;Acc:C5DB59]

Coordinates

chr8:+:414952..415829

Molecular Weight (calculated)

21373.1 Da

IEP (calculated)

4.286

GRAVY (calculated)

-0.349

Length

192 amino acids

Sequence
(BLAST)

001: MESGGAGRRS LSINNRSFRL RCPSLNSVRL RRIFDLFDKN SDGTITVTEL SQALALLGLD ADLPDLQSIV QSHIKPGNLG LEFDDFAALH LSLNDTYFFD
101: VEEELKGDGA EQSELSQEES DLNEAFKVFD EDGDGYISAQ ELQVVLGKLG LAEGKEIGRV KQMITSVDRN QDGRVDFFEF KDMMRSVVVR SS

Best Arabidopsis Sequence Match ( AT4G20780.1 )
(BLAST)

001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S

Arabidopsis Description

CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.