CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2
plasma membrane 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007181_P001	Maize	plastid	90.45	88.67
Zm00001d022430_P001	Maize	cytosol, plastid	88.44	88.0
TraesCS2A01G103600.1	Wheat	plastid	75.88	79.06
Os07t0681400-01	Rice	cytosol	77.89	78.68
TraesCS2B01G120900.1	Wheat	plastid	75.38	78.53
TraesCS2D01G103400.1	Wheat	plastid	74.87	78.01
Os08t0144100-01	Rice	plasma membrane	76.38	77.55
TraesCS7D01G302700.1	Wheat	plastid	74.87	76.02
TraesCS7A01G306000.1	Wheat	plastid	74.87	76.02
HORVU7Hr1G072770.1	Barley	plastid	75.38	75.76
TraesCS7B01G206200.1	Wheat	plastid	74.87	75.25
EER92319	Sorghum	cytosol	66.83	70.74
KXG39446	Sorghum	plastid	66.83	69.63
GSMUA_Achr8P01570_001	Banana	cytosol	60.3	64.86
AT5G44460.1	Thale cress	cytosol	49.75	54.7
Bra033745.1-P	Field mustard	cytosol	49.75	54.4
Bra013470.1-P	Field mustard	cytosol	51.26	54.26
CDX79002	Canola	cytosol	51.26	54.26
AT4G20780.1	Thale cress	cytosol	51.76	53.93
CDY49013	Canola	cytosol	49.25	53.85
CDX94789	Canola	cytosol	49.25	53.85
CDX94006	Canola	cytosol	49.75	53.23
CDY31433	Canola	cytosol, plastid	48.74	52.72
CDX82773	Canola	cytosol	50.25	52.36
Bra020916.1-P	Field mustard	cytosol, plastid	48.24	52.17
CDX76451	Canola	cytosol, plastid	48.24	52.17
Solyc10g074740.1.1	Tomato	cytosol, plastid	51.26	51.26
CDY14927	Canola	cytosol	46.73	51.1
Bra039511.1-P	Field mustard	cytosol	46.73	51.1
KRH40630	Soybean	mitochondrion	46.73	50.82
PGSC0003DMT400071219	Potato	cytosol, plastid	50.25	50.25
VIT_08s0056g00290.t01	Wine grape	cytosol, mitochondrion	47.74	49.48
CDX96968	Canola	cytosol	46.23	47.67
OQU78964	Sorghum	cytosol	35.68	43.03
CDX98672	Canola	cytosol	50.75	39.76
Bra038801.1-P	Field mustard	cytosol	50.25	38.31
EES04217	Sorghum	cytosol, mitochondrion, plastid	30.15	31.75
EES19251	Sorghum	cytosol	27.64	30.73
EES11048	Sorghum	plastid	35.18	29.41
EES00360	Sorghum	cytosol	29.15	28.16
EER96860	Sorghum	cytosol, mitochondrion	25.13	27.17
EES19444	Sorghum	plastid	27.14	27.14
KXG27695	Sorghum	plastid	26.63	26.9
EER87935	Sorghum	endoplasmic reticulum, vacuole	31.16	25.31
EES02048	Sorghum	plastid	23.62	24.61
EES16521	Sorghum	plastid	23.62	21.96

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EntrezGene:8078566	UniProt:C5X5N4	EnsemblPlants:EER97743	ProteinID:EER97743
ProteinID:EER97743.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:IPR002048	PFAM:PF13405	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR45003	PANTHER:PTHR45003:SF2	SMART:SM00054	EnsemblPlantsGene:SORBI_3002G419700	SUPFAM:SSF47473	unigene:Sbi.9005
UniParc:UPI0001A835E4	RefSeq:XP_002461222.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:76711086..76713421

Molecular Weight (calculated)

21321.0 Da

IEP (calculated)

4.335

GRAVY (calculated)

-0.240

Length

199 amino acids

Sequence
(BLAST)

001: MDSNQGVVAV VKPTLAKGTP SASFRLRNGS LNAVRLRRVF DLFDRNGDGE ITVDELAQAL DALGLDADRA GLAATVGAYV PDGAAGLRFE DFDKLHRALG
101: DAFFGALADH QDDAADAGGK KGEEDEQEMR EAFKVFDVDG DGFISAAELQ TVLKKLGLPE ASSMANVREM ITNVDRDSDG RVDFSEFKCM MKGITVWGA

Best Arabidopsis Sequence Match ( AT4G20780.1 )
(BLAST)

001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S

Arabidopsis Description

CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.