CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003197_P001	Maize	plastid	77.73	83.33
TraesCS2A01G349100.1	Wheat	plastid	65.97	73.02
Os04t0492800-01	Rice	cytosol, mitochondrion, nucleus, plastid	59.66	72.45
TraesCS2B01G367500.1	Wheat	plastid	65.13	72.43
TraesCS2D01G347500.1	Wheat	plastid	65.55	70.91
GSMUA_Achr8P28890_001	Banana	cytosol	42.44	67.33
GSMUA_Achr3P16870_001	Banana	cytosol	41.6	65.56
GSMUA_Achr1P13420_001	Banana	cytosol	40.34	64.0
OQU78964	Sorghum	cytosol	44.12	63.64
GSMUA_Achr2P05840_001	Banana	cytosol	39.92	63.33
Bra040379.1-P	Field mustard	cytosol	39.08	62.42
CDY60818	Canola	cytosol	39.08	62.42
GSMUA_Achr6P28770_001	Banana	cytosol	39.08	62.0
Solyc06g083000.1.1	Tomato	cytosol	38.24	61.07
PGSC0003DMT400071189	Potato	cytosol	37.82	60.4
AT3G07490.1	Thale cress	cytosol	38.66	60.13
VIT_07s0289g00040.t01	Wine grape	cytosol	38.66	59.74
VIT_07s0141g00300.t01	Wine grape	cytosol	38.66	59.74
Solyc09g055880.1.1	Tomato	cytosol	37.4	59.33
KRG95097	Soybean	cytosol	37.4	58.55
KRH66763	Soybean	cytosol	36.97	57.89
Bra001254.1-P	Field mustard	cytosol	36.97	57.52
CDY07993	Canola	cytosol	36.97	57.52
CDX74043	Canola	cytosol	36.55	56.86
GSMUA_Achr9P07990_001	Banana	endoplasmic reticulum, golgi, plastid	47.06	50.68
EES04217	Sorghum	cytosol, mitochondrion, plastid	29.83	37.57
EER92319	Sorghum	cytosol	28.99	36.7
KXG39446	Sorghum	plastid	29.41	36.65
EES19444	Sorghum	plastid	29.83	35.68
EER97743	Sorghum	plastid	29.41	35.18
EER87935	Sorghum	endoplasmic reticulum, vacuole	35.71	34.69
EES19251	Sorghum	cytosol	26.05	34.64
EES00360	Sorghum	cytosol	27.31	31.55
EER96860	Sorghum	cytosol, mitochondrion	23.95	30.98
EES02048	Sorghum	plastid	21.85	27.23
KXG27695	Sorghum	plastid	22.27	26.9
EES16521	Sorghum	plastid	23.95	26.64

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EntrezGene:8073712	UniProt:C5YBE2	EnsemblPlants:EES11048	ProteinID:EES11048
ProteinID:EES11048.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:IPR002048	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10891
PANTHER:PTHR10891:SF642	SMART:SM00054	EnsemblPlantsGene:SORBI_3006G131600	SUPFAM:SSF47473	UniParc:UPI0001A86D11	RefSeq:XP_002446720.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:49593794..49595410

Molecular Weight (calculated)

25033.2 Da

IEP (calculated)

4.371

GRAVY (calculated)

-0.457

Length

238 amino acids

Sequence
(BLAST)

001: MLSSSSPLVK LPLLPRGLLS YLPTSILPSG RESTATPAAA NAPSTPPSSP KKMSSSSAQQ QQQAGNGGSS KKADSAELAR VFELFDKNGD GRITREELAE
101: SLGKLGMSVP GDELASMIAR IDANGDGCVD VEEFGELYRA IMAGDSSANG AGKEGEAGGE EEDDEDMREA FRVFDANGDG YITVDELAAV LSSLGLKQGR
201: TAEECRRMIG HVDRDGDGRV DFHEFRQMMR AGGLASLG

Best Arabidopsis Sequence Match ( AT4G03290.1 )
(BLAST)

001: MDSTELNRVF QMFDKDGDGK ITTKELNESF KNLGIIIPED ELTQIIQKID VNGDGCVDIE EFGELYKTIM VEDEDEVGEE DMKEAFNVFD RNGDGFITVD
101: ELKAVLSSLG LKQGKTLEEC RKMIMQVDVD GDGRVNYMEF RQMMKKGRFF SSLS

Arabidopsis Description

CML6Calmodulin-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.