Factsheet for PGSC0003DMT400071189

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083000.1.1	Tomato	cytosol	97.99	97.99
GSMUA_Achr1P13420_001	Banana	cytosol	79.19	78.67
Bra040379.1-P	Field mustard	cytosol	77.85	77.85
CDY60818	Canola	cytosol	77.85	77.85
AT3G07490.1	Thale cress	cytosol	79.87	77.78
GSMUA_Achr2P05840_001	Banana	cytosol	77.18	76.67
VIT_07s0141g00300.t01	Wine grape	cytosol	77.85	75.32
VIT_07s0289g00040.t01	Wine grape	cytosol	77.85	75.32
GSMUA_Achr3P16870_001	Banana	cytosol	75.17	74.17
PGSC0003DMT400018016	Potato	cytosol	74.5	74.0
GSMUA_Achr8P28890_001	Banana	cytosol	74.5	74.0
CDY07993	Canola	cytosol	75.84	73.86
Bra001254.1-P	Field mustard	cytosol	75.84	73.86
KRG95097	Soybean	cytosol	75.17	73.68
CDX74043	Canola	cytosol	75.17	73.2
KRH66763	Soybean	cytosol	74.5	73.03
GSMUA_Achr6P28770_001	Banana	cytosol	71.81	71.33
Zm00001d023992_P001	Maize	cytosol	69.13	64.78
OQU78964	Sorghum	cytosol	69.13	62.42
TraesCS7A01G050500.1	Wheat	cytosol	65.77	60.12
TraesCS7D01G045800.1	Wheat	cytosol	65.77	56.65
Os12t0228800-01	Rice	cytosol	63.09	55.95
TraesCS4A01G436700.1	Wheat	cytosol	65.1	55.75
GSMUA_Achr9P07990_001	Banana	endoplasmic reticulum, golgi, plastid	79.19	53.39
PGSC0003DMT400069195	Potato	golgi, plastid	75.17	51.14
Os04t0492800-01	Rice	cytosol, mitochondrion, nucleus, plastid	65.77	50.0
HORVU7Hr1G008910.2	Barley	cytosol	67.79	47.2
PGSC0003DMT400086334	Potato	cytosol	51.68	43.5
TraesCS2B01G367500.1	Wheat	plastid	61.07	42.52
TraesCS2A01G349100.1	Wheat	plastid	60.4	41.86
TraesCS2D01G347500.1	Wheat	plastid	61.07	41.36
PGSC0003DMT400078654	Potato	cytosol	40.94	39.1
PGSC0003DMT400026987	Potato	cytosol	37.58	38.62
Zm00001d003197_P001	Maize	plastid	56.38	37.84
EES11048	Sorghum	plastid	60.4	37.82
PGSC0003DMT400074098	Potato	cytosol	38.26	37.01
PGSC0003DMT400025178	Potato	cytosol	40.94	35.06
PGSC0003DMT400075801	Potato	plastid	44.3	34.02
PGSC0003DMT400079359	Potato	extracellular, golgi	53.02	33.76
PGSC0003DMT400014742	Potato	cytosol	36.91	33.54
PGSC0003DMT400033250	Potato	cytosol	39.6	30.73
PGSC0003DMT400089961	Potato	cytosol	34.9	30.06
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	40.27	29.27
PGSC0003DMT400071219	Potato	cytosol, plastid	37.58	28.14
PGSC0003DMT400076709	Potato	mitochondrion	38.93	27.49
PGSC0003DMT400066610	Potato	plastid	33.56	27.03
PGSC0003DMT400027581	Potato	cytosol, plastid	38.26	26.39

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102594210	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009567	InterPro:IPR002048	UniProt:M1CNC3
PFAM:PF13499	EnsemblPlantsGene:PGSC0003DMG402027685	PGSC:PGSC0003DMG402027685	EnsemblPlants:PGSC0003DMT400071189	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR10891	PANTHER:PTHR10891:SF546	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000295FB3D	RefSeq:XP_006366822.1
SEG:seg	:	:	:	:	:

Description

Calcium-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG402027685]

Coordinates

chr6:-:57955198..57955839

Molecular Weight (calculated)

17018.2 Da

IEP (calculated)

4.110

GRAVY (calculated)

-0.534

Length

149 amino acids

Sequence
(BLAST)

001: MDPVELNRIF QMFDRNGDGT ITKKELNDSL QSLGIHIEEQ ELVHMIEKID VNGDGYIDID EFGTLYKSIM DEKDEEEDMR EAFNVFDQNG DGYITVEELR
101: SVLGSLGLKQ GKTLEDCKRM IMKVDVDGDG MVDFKEFRQM MKGGGFSLT

Best Arabidopsis Sequence Match ( AT3G07490.1 )
(BLAST)

001: MDQAELARIF QMFDRNGDGK ITKQELNDSL ENLGIYIPDK DLVQMIEKID LNGDGYVDIE EFGGLYQTIM EERDEEEDMR EAFNVFDQNR DGFITVEELR
101: SVLASLGLKQ GRTLEDCKRM ISKVDVDGDG MVNFKEFKQM MKGGGFAALG SNL

Arabidopsis Description

CML3CML3 [Source:UniProtKB/TrEMBL;Acc:A0A178V7U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.