Factsheet for PGSC0003DMT400026987

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g063350.1.1	Tomato	cytosol	94.48	94.48
PGSC0003DMT400078654	Potato	cytosol	78.62	73.08
KRH73006	Soybean	cytosol	64.83	66.67
KRH30955	Soybean	cytosol	62.76	66.42
KRG97926	Soybean	cytosol	63.45	66.19
KRH17370	Soybean	cytosol	64.14	65.96
VIT_14s0006g01400.t01	Wine grape	cytosol	67.59	65.33
Bra004165.1-P	Field mustard	cytosol	55.86	52.94
CDX96150	Canola	cytosol	55.86	52.94
AT1G66400.1	Thale cress	cytosol	57.24	52.87
CDY55679	Canola	cytosol	55.17	52.29
PGSC0003DMT400074098	Potato	cytosol	55.17	51.95
CDX99691	Canola	cytosol	55.86	51.27
PGSC0003DMT400014742	Potato	cytosol	57.93	51.22
CDY27652	Canola	cytosol	55.86	50.94
Bra025439.1-P	Field mustard	cytosol	55.86	50.62
AT5G37770.1	Thale cress	cytosol	55.86	50.31
PGSC0003DMT400025178	Potato	cytosol	51.03	42.53
PGSC0003DMT400075801	Potato	plastid	51.03	38.14
PGSC0003DMT400018016	Potato	cytosol	39.31	38.0
PGSC0003DMT400071189	Potato	cytosol	38.62	37.58
PGSC0003DMT400033250	Potato	cytosol	45.52	34.38
PGSC0003DMT400089961	Potato	cytosol	40.0	33.53
PGSC0003DMT400066610	Potato	plastid	42.07	32.97
PGSC0003DMT400086334	Potato	cytosol	40.0	32.77
PGSC0003DMT400076709	Potato	mitochondrion	43.45	29.86
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	39.31	27.8
PGSC0003DMT400079359	Potato	extracellular, golgi	42.76	26.5
PGSC0003DMT400027581	Potato	cytosol, plastid	38.62	25.93
PGSC0003DMT400071219	Potato	cytosol, plastid	34.48	25.13
PGSC0003DMT400069195	Potato	golgi, plastid	37.24	24.66

Protein Annotations

EnsemblPlants:PGSC0003DMT400026987	EnsemblPlantsGene:PGSC0003DMG400010410	EntrezGene:102598816	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891
PANTHER:PTHR10891:SF698	PFAM:PF13499	PFscan:PS50222	PGSC:PGSC0003DMG400010410	RefSeq:XP_006346894.1	ScanProsite:PS00018
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002960556	UniProt:M1ANZ3	MapMan:35.1	:

Description

Calcium-binding protein CML23 [Source:PGSC_GENE;Acc:PGSC0003DMG400010410]

Coordinates

chr2:+:22247604..22248529

Molecular Weight (calculated)

16168.3 Da

IEP (calculated)

4.810

GRAVY (calculated)

-0.514

Length

145 amino acids

Sequence
(BLAST)

001: MAKLTARMKE VEKVFRKFDT NGDGKISLLE LDEVLKALGT KTTPDEAKRM MLEVDTDGDG FIDLEEFAAF HCPVEGSNSK DLRDAFDLYD KDKNGKISAA
101: ELHSVMKGIG EKCSLKDCRR MISSVDVDGD GSVNFEEFKK MMTKA

Best Arabidopsis Sequence Match ( AT1G66400.1 )
(BLAST)

001: MSKNVSRNCL GSMEDIKKVF QRFDKNNDGK ISIDELKDVI GALSPNASQE ETKAMMKEFD LDGNGFIDLD EFVALFQISD QSSNNSAIRD LKEAFDLYDL
101: DRNGRISANE LHSVMKNLGE KCSIQDCQRM INKVDSDGDG CVDFEEFKKM MMINGSA

Arabidopsis Description

CML23Probable calcium-binding protein CML23 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.