Factsheet for PGSC0003DMT400078654

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 2
plasma membrane 1
vacuole 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091500.1.1	Tomato	cytosol	96.15	96.15
PGSC0003DMT400026987	Potato	cytosol	73.08	78.62
KRG97926	Soybean	cytosol	61.54	69.06
KRH30955	Soybean	cytosol	59.62	67.88
KRH17370	Soybean	cytosol	60.9	67.38
KRH73006	Soybean	cytosol	60.9	67.38
VIT_14s0006g01400.t01	Wine grape	cytosol	63.46	66.0
CDX96150	Canola	cytosol	52.56	53.59
Bra004165.1-P	Field mustard	cytosol	52.56	53.59
CDY55679	Canola	cytosol	51.92	52.94
AT1G66400.1	Thale cress	cytosol	53.21	52.87
CDY27652	Canola	cytosol	53.21	52.2
PGSC0003DMT400074098	Potato	cytosol	51.28	51.95
CDX99691	Canola	cytosol	52.56	51.9
Bra025439.1-P	Field mustard	cytosol	53.21	51.88
PGSC0003DMT400014742	Potato	cytosol	54.49	51.83
AT5G37770.1	Thale cress	cytosol	53.21	51.55
PGSC0003DMT400025178	Potato	cytosol	48.08	43.1
PGSC0003DMT400071189	Potato	cytosol	39.1	40.94
PGSC0003DMT400075801	Potato	plastid	50.64	40.72
PGSC0003DMT400018016	Potato	cytosol	38.46	40.0
PGSC0003DMT400066610	Potato	plastid	41.03	34.59
PGSC0003DMT400086334	Potato	cytosol	37.18	32.77
PGSC0003DMT400089961	Potato	cytosol	35.9	32.37
PGSC0003DMT400033250	Potato	cytosol	39.74	32.29
PGSC0003DMT400076709	Potato	mitochondrion	42.31	31.28
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	39.1	29.76
PGSC0003DMT400069195	Potato	golgi, plastid	39.74	28.31
PGSC0003DMT400027581	Potato	cytosol, plastid	37.18	26.85
PGSC0003DMT400079359	Potato	extracellular, golgi	36.54	24.36
PGSC0003DMT400071219	Potato	cytosol, plastid	30.77	24.12

Protein Annotations

EnsemblPlants:PGSC0003DMT400078654	EnsemblPlantsGene:PGSC0003DMG400030608	EntrezGene:102593516	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891
PANTHER:PTHR10891:SF698	PFAM:PF13499	PFscan:PS50222	PGSC:PGSC0003DMG400030608	RefSeq:XP_006357771.1	ScanProsite:PS00018
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI00029599CA	UniProt:M1D0I1	MapMan:35.1	:

Description

Calcium-binding protein CML24 [Source:PGSC_GENE;Acc:PGSC0003DMG400030608]

Coordinates

chr2:+:41899336..41900585

Molecular Weight (calculated)

17236.4 Da

IEP (calculated)

4.548

GRAVY (calculated)

-0.558

Length

156 amino acids

Sequence
(BLAST)

001: MDKTPSDSKQ PIVSSAEMDE VEKVFRKFDA NGDGKISLSE LGAILNALGS KTSPDEVKRI MLEVDTDGDG FIDLKEFAAF YCPGGADSDN KELREAFDLY
101: DKDKNGKITA AELHSVMKSL GEKCSLKDCR RMISKVDVDG DGCVNFEEFK KMMSRT

Best Arabidopsis Sequence Match ( AT5G37770.1 )
(BLAST)

001: MSSKNGVVRS CLGSMDDIKK VFQRFDKNGD GKISVDELKE VIRALSPTAS PEETVTMMKQ FDLDGNGFID LDEFVALFQI GIGGGGNNRN DVSDLKEAFE
101: LYDLDGNGRI SAKELHSVMK NLGEKCSVQD CKKMISKVDI DGDGCVNFDE FKKMMSNGGG A

Arabidopsis Description

CML24TCH2 [Source:UniProtKB/TrEMBL;Acc:A0A178UBB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.