Factsheet for Bra025439.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
vacuole 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27652	Canola	cytosol	99.38	100.0
CDX99691	Canola	cytosol	98.12	99.37
AT5G37770.1	Thale cress	cytosol	86.25	85.71
Bra004165.1-P	Field mustard	cytosol	76.88	80.39
KRH30955	Soybean	cytosol	50.62	59.12
KRG97926	Soybean	cytosol	50.62	58.27
KRH73006	Soybean	cytosol	50.0	56.74
PGSC0003DMT400026987	Potato	cytosol	50.62	55.86
KRH17370	Soybean	cytosol	48.75	55.32
Solyc02g063350.1.1	Tomato	cytosol	49.38	54.48
VIT_14s0006g01400.t01	Wine grape	cytosol	50.0	53.33
PGSC0003DMT400078654	Potato	cytosol	51.88	53.21
Solyc02g091500.1.1	Tomato	cytosol	51.88	53.21
Bra032677.1-P	Field mustard	cytosol	41.25	43.42
Bra015979.1-P	Field mustard	cytosol	41.88	42.14
Bra034907.1-P	Field mustard	cytosol	40.0	42.11
Bra035972.1-P	Field mustard	cytosol	28.12	40.54
Bra025924.1-P	Field mustard	cytosol	41.88	40.12
Bra032785.1-P	Field mustard	cytosol	31.88	39.84
Bra040379.1-P	Field mustard	cytosol	36.88	39.6
Bra001254.1-P	Field mustard	cytosol	36.25	37.91
Bra019554.1-P	Field mustard	cytosol	39.38	37.28
Bra034870.1-P	Field mustard	cytosol	39.38	37.28
Bra037722.1-P	Field mustard	cytosol	39.38	37.28
Bra016936.1-P	Field mustard	cytosol	24.38	37.14
Bra012497.1-P	Field mustard	cytosol	42.5	36.96
Bra016564.1-P	Field mustard	cytosol	40.0	36.78
Bra039845.1-P	Field mustard	plastid	43.12	36.51
Bra000836.1-P	Field mustard	cytosol	34.38	35.71
Bra010974.1-P	Field mustard	cytosol	40.0	34.22
Bra007450.1-P	Field mustard	endoplasmic reticulum, vacuole	38.12	30.81
Bra039511.1-P	Field mustard	cytosol	33.75	29.67
Bra003376.1-P	Field mustard	vacuole	37.5	29.56
Bra033745.1-P	Field mustard	cytosol	33.12	29.12
Bra013470.1-P	Field mustard	cytosol	33.12	28.19
Bra004620.1-P	Field mustard	cytosol, mitochondrion, plastid	35.62	26.76
Bra020916.1-P	Field mustard	cytosol, plastid	30.62	26.63
Bra029821.1-P	Field mustard	plastid	32.5	25.0
Bra038801.1-P	Field mustard	cytosol	34.38	21.07

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EnsemblPlantsGene:Bra025439	EnsemblPlants:Bra025439.1	EnsemblPlants:Bra025439.1-P	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009408	GO:GO:0009409	GO:GO:0009605	GO:GO:0009612	GO:GO:0009628
GO:GO:0009646	GO:GO:0009719	GO:GO:0009733	GO:GO:0009737	GO:GO:0009791	GO:GO:0009908
GO:GO:0009909	GO:GO:0009987	GO:GO:0010038	GO:GO:0016020	GO:GO:0042542	GO:GO:0045087
GO:GO:0048574	GO:GO:0051592	GO:GO:0080164	InterPro:IPR002048	UniProt:M4E9I3	PFAM:PF13499
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10891	PANTHER:PTHR10891:SF573	SMART:SM00054	SUPFAM:SSF47473
UniParc:UPI000254387F	SEG:seg	:	:	:	:

Description

AT5G37770 (E=2e-072) TCH2, CML24 | TCH2 (TOUCH 2); calcium ion binding

Coordinates

chrA04:-:8729250..8729732

Molecular Weight (calculated)

17507.8 Da

IEP (calculated)

4.639

GRAVY (calculated)

-0.540

Length

160 amino acids

Sequence
(BLAST)

001: MSKSNGARSC LGSMDDIRRV FQRFDKNGDG KISVDELKEV IRALSPTASP EETVKMMKQF DLDGNGFIDM DEFVSLFQIG VNQGGGGGGN SKNDLKEAFE
101: LYDLDGNGRI SAKELHSVMK NLGEKCSVQD CRKMISKVDT DGDGCVNFEE FKLMMNNGGA

Best Arabidopsis Sequence Match ( AT5G37770.1 )
(BLAST)

001: MSSKNGVVRS CLGSMDDIKK VFQRFDKNGD GKISVDELKE VIRALSPTAS PEETVTMMKQ FDLDGNGFID LDEFVALFQI GIGGGGNNRN DVSDLKEAFE
101: LYDLDGNGRI SAKELHSVMK NLGEKCSVQD CKKMISKVDI DGDGCVNFDE FKKMMSNGGG A

Arabidopsis Description

CML24TCH2 [Source:UniProtKB/TrEMBL;Acc:A0A178UBB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.