Factsheet for Bra004165.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96150	Canola	cytosol	100.0	100.0
AT1G66400.1	Thale cress	cytosol	81.05	78.98
Bra025439.1-P	Field mustard	cytosol	80.39	76.88
KRH30955	Soybean	cytosol	54.9	61.31
KRG97926	Soybean	cytosol	53.59	58.99
KRH73006	Soybean	cytosol	51.63	56.03
VIT_14s0006g01400.t01	Wine grape	cytosol	54.9	56.0
PGSC0003DMT400026987	Potato	cytosol	52.94	55.86
Solyc02g063350.1.1	Tomato	cytosol	52.29	55.17
KRH17370	Soybean	cytosol	49.67	53.9
Solyc02g091500.1.1	Tomato	cytosol	54.25	53.21
PGSC0003DMT400078654	Potato	cytosol	53.59	52.56
Bra040379.1-P	Field mustard	cytosol	40.52	41.61
Bra015979.1-P	Field mustard	cytosol	43.14	41.51
Bra032677.1-P	Field mustard	cytosol	40.52	40.79
Bra025924.1-P	Field mustard	cytosol	44.44	40.72
Bra035972.1-P	Field mustard	cytosol	29.41	40.54
Bra034907.1-P	Field mustard	cytosol	39.22	39.47
Bra001254.1-P	Field mustard	cytosol	39.22	39.22
Bra016564.1-P	Field mustard	cytosol	44.44	39.08
Bra032785.1-P	Field mustard	cytosol	31.37	37.5
Bra019554.1-P	Field mustard	cytosol	41.18	37.28
Bra034870.1-P	Field mustard	cytosol	41.18	37.28
Bra037722.1-P	Field mustard	cytosol	41.18	37.28
Bra016936.1-P	Field mustard	cytosol	24.84	36.19
Bra012497.1-P	Field mustard	cytosol	43.14	35.87
Bra000836.1-P	Field mustard	cytosol	35.95	35.71
Bra039845.1-P	Field mustard	plastid	43.79	35.45
Bra010974.1-P	Field mustard	cytosol	39.87	32.62
Bra007450.1-P	Field mustard	endoplasmic reticulum, vacuole	39.87	30.81
Bra003376.1-P	Field mustard	vacuole	39.87	30.05
Bra039511.1-P	Field mustard	cytosol	32.68	27.47
Bra033745.1-P	Field mustard	cytosol	31.37	26.37
Bra013470.1-P	Field mustard	cytosol	31.37	25.53
Bra020916.1-P	Field mustard	cytosol, plastid	30.07	25.0
Bra004620.1-P	Field mustard	cytosol, mitochondrion, plastid	34.64	24.88
Bra029821.1-P	Field mustard	plastid	33.33	24.52
Bra038801.1-P	Field mustard	cytosol	33.33	19.54

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EnsemblPlantsGene:Bra004165	EnsemblPlants:Bra004165.1	EnsemblPlants:Bra004165.1-P	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909
GO:GO:0009987	GO:GO:0080164	InterPro:IPR002048	UniProt:M4CIY1	PFAM:PF13499	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR10891	PANTHER:PTHR10891:SF573	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI00025414F9

Description

AT5G37770 (E=3e-065) TCH2, CML24 | TCH2 (TOUCH 2); calcium ion binding

Coordinates

chrA07:-:17170333..17170794

Molecular Weight (calculated)

17045.2 Da

IEP (calculated)

4.217

GRAVY (calculated)

-0.425

Length

153 amino acids

Sequence
(BLAST)

001: MSKSGRYCLG SMEDIRAVFQ RFDKNGDGKI SIDELKDVIG ALSPTASPEE TTLMMKEFDL DGNGYIDMDE FVALFQIEDG GDIRDLKEAF DLYDLDGNGR
101: ISVNELHSVM KNLGEKCSLE DCKRIISKVD ADGDGCVNFE EFKKMMMNGR ATA

Best Arabidopsis Sequence Match ( AT1G66400.1 )
(BLAST)

001: MSKNVSRNCL GSMEDIKKVF QRFDKNNDGK ISIDELKDVI GALSPNASQE ETKAMMKEFD LDGNGFIDLD EFVALFQISD QSSNNSAIRD LKEAFDLYDL
101: DRNGRISANE LHSVMKNLGE KCSIQDCQRM INKVDSDGDG CVDFEEFKKM MMINGSA

Arabidopsis Description

CML23Probable calcium-binding protein CML23 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.