Factsheet for Bra038801.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000430.1-P
Bra004524.1-P
Bra039271.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20780.1	Bra000430.1-P	AT2G46600.1	19720824
AT4G20780.1	Bra004524.1-P	AT2G46600.1	19720824
AT4G20780.1	Bra039271.1-P	AT2G46600.1	19720824

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98672	Canola	cytosol	95.79	98.43
AT4G20780.1	Thale cress	cytosol	60.54	82.72
Bra013470.1-P	Field mustard	cytosol	59.39	82.45
Bra020916.1-P	Field mustard	cytosol, plastid	56.7	80.43
Bra033745.1-P	Field mustard	cytosol	51.72	74.18
Bra039511.1-P	Field mustard	cytosol	49.81	71.43
Solyc10g074740.1.1	Tomato	cytosol, plastid	45.21	59.3
VIT_08s0056g00290.t01	Wine grape	cytosol, mitochondrion	43.3	58.85
KRH40630	Soybean	mitochondrion	41.0	58.47
PGSC0003DMT400071219	Potato	cytosol, plastid	44.06	57.79
Zm00001d029028_P001	Maize	plastid	39.08	54.26
GSMUA_Achr8P01570_001	Banana	cytosol	38.31	54.05
Zm00001d047535_P001	Maize	plastid	38.31	53.48
EER92319	Sorghum	cytosol	37.93	52.66
KXG39446	Sorghum	plastid	38.31	52.36
TraesCS4D01G174400.1	Wheat	plastid	37.55	51.85
Os03t0331700-02	Rice	plasma membrane	37.55	51.58
TraesCS4A01G132300.1	Wheat	plastid	37.55	51.31
TraesCS4B01G172400.1	Wheat	plastid	36.78	50.79
HORVU4Hr1G050990.1	Barley	plastid	37.16	50.26
EER97743	Sorghum	plastid	38.31	50.25
TraesCS7A01G306000.1	Wheat	plastid	37.55	50.0
TraesCS7D01G302700.1	Wheat	plastid	37.16	49.49
Os08t0144100-01	Rice	plasma membrane	37.16	49.49
TraesCS5D01G348900.1	Wheat	cytosol	30.65	49.08
Zm00001d022430_P001	Maize	cytosol, plastid	37.55	49.0
TraesCS7B01G206200.1	Wheat	plastid	37.16	48.99
HORVU7Hr1G072770.1	Barley	plastid	37.16	48.99
TraesCS5A01G343000.1	Wheat	cytosol, mitochondrion	30.65	48.78
Zm00001d007181_P001	Maize	plastid	37.93	48.77
TraesCS5B01G342800.1	Wheat	cytosol	30.27	48.77
TraesCS2B01G120900.1	Wheat	plastid	35.63	48.69
TraesCS2A01G103600.1	Wheat	plastid	35.63	48.69
TraesCS2D01G103400.1	Wheat	plastid	35.25	48.17
Os07t0681400-01	Rice	cytosol	35.63	47.21
HORVU5Hr1G085800.2	Barley	cytosol	30.65	45.71
Bra000836.1-P	Field mustard	cytosol	25.29	42.86
Bra040379.1-P	Field mustard	cytosol	23.75	41.61
Bra001254.1-P	Field mustard	cytosol	24.14	41.18
Os05t0312600-01	Rice	cytosol, plastid	31.03	41.12
Bra034907.1-P	Field mustard	cytosol	23.37	40.13
Bra035972.1-P	Field mustard	cytosol	16.86	39.64
Bra032677.1-P	Field mustard	cytosol	22.99	39.47
Bra034870.1-P	Field mustard	cytosol	25.29	39.05
Bra037722.1-P	Field mustard	cytosol	25.29	39.05
Bra019554.1-P	Field mustard	cytosol	25.29	39.05
Bra025439.1-P	Field mustard	cytosol	21.07	34.38
Bra004165.1-P	Field mustard	cytosol	19.54	33.33
Bra032785.1-P	Field mustard	cytosol	15.71	32.03
Bra007450.1-P	Field mustard	endoplasmic reticulum, vacuole	23.75	31.31
Bra003376.1-P	Field mustard	vacuole	24.14	31.03
Bra010974.1-P	Field mustard	cytosol	21.84	30.48
Bra016936.1-P	Field mustard	cytosol	12.26	30.48
Bra039845.1-P	Field mustard	plastid	21.46	29.63
Bra012497.1-P	Field mustard	cytosol	20.31	28.8
Bra015979.1-P	Field mustard	cytosol	17.24	28.3
Bra016564.1-P	Field mustard	cytosol	18.77	28.16
Bra025924.1-P	Field mustard	cytosol	17.62	27.54
Bra004620.1-P	Field mustard	cytosol, mitochondrion, plastid	18.39	22.54
Bra029821.1-P	Field mustard	plastid	16.86	21.15

Protein Annotations

EnsemblPlants:Bra038801.1	EnsemblPlants:Bra038801.1-P	EnsemblPlantsGene:Bra038801	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR45003
PANTHER:PTHR45003:SF2	PFAM:PF00036	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SEG:seg
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002540C18	UniProt:M4FCI2	MapMan:35.1	:

Description

AT4G20780 (E=2e-075) | calcium-binding protein, putative

Coordinates

chrA03:-:23983300..23984350

Molecular Weight (calculated)

28971.4 Da

IEP (calculated)

4.313

GRAVY (calculated)

-0.226

Length

261 amino acids

Sequence
(BLAST)

001: METKIMESNG ENKKVERQSS SFRLRSPSLN ALRLQRIFDL FDKNGDGLIT LDELSQALSR LGLDADLSDL KSTVESYIQP GNTGLDFDDF TSLHKTLDES
101: FFGGAGDCYE SSPDSAAAEE ADLAEAFKVF DENGDGFISA RELQAVLKKL GLPEGSEMER VEKMIVSVDR NQDGRVDFSE FKNMMRIVLI VLEDLAESMG
201: RLRLVHVESM VLLITLDPPN SAAYGVAKQH LQFREIVAWD VAAALQGLLN QEQCIRLQVT A

Best Arabidopsis Sequence Match ( AT4G20780.1 )
(BLAST)

001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S

Arabidopsis Description

CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.