Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G065900.1 | |
| TraesCS6B01G088900.1 | |
| TraesCSU01G118100.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G20780.1 | TraesCS6A01G065900.1 | AT2G46600.1 | 19720824 |
| AT4G20780.1 | TraesCS6B01G088900.1 | AT2G46600.1 | 19720824 |
| AT4G20780.1 | TraesCSU01G118100.1 | AT2G46600.1 | 19720824 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G343000.1 | Wheat | cytosol, mitochondrion | 97.55 | 96.95 |
| TraesCS5B01G342800.1 | Wheat | cytosol | 94.48 | 95.06 |
| HORVU5Hr1G085800.2 | Barley | cytosol | 90.8 | 84.57 |
| Os05t0312600-01 | Rice | cytosol, plastid | 72.39 | 59.9 |
| GSMUA_Achr8P01570_001 | Banana | cytosol | 53.37 | 47.03 |
| TraesCS4D01G174400.1 | Wheat | plastid | 53.99 | 46.56 |
| TraesCS2D01G103400.1 | Wheat | plastid | 51.53 | 43.98 |
| TraesCS7D01G302700.1 | Wheat | plastid | 51.53 | 42.86 |
| CDX94006 | Canola | cytosol | 48.47 | 42.47 |
| Bra020916.1-P | Field mustard | cytosol, plastid | 47.24 | 41.85 |
| CDX76451 | Canola | cytosol, plastid | 47.24 | 41.85 |
| CDY31433 | Canola | cytosol, plastid | 47.24 | 41.85 |
| Bra013470.1-P | Field mustard | cytosol | 47.24 | 40.96 |
| CDX79002 | Canola | cytosol | 47.24 | 40.96 |
| AT5G44460.1 | Thale cress | cytosol | 45.4 | 40.88 |
| KRH40630 | Soybean | mitochondrion | 45.4 | 40.44 |
| AT4G20780.1 | Thale cress | cytosol | 47.24 | 40.31 |
| CDX82773 | Canola | cytosol | 47.24 | 40.31 |
| Bra033745.1-P | Field mustard | cytosol | 44.17 | 39.56 |
| CDX94789 | Canola | cytosol | 44.17 | 39.56 |
| CDY49013 | Canola | cytosol | 43.56 | 39.01 |
| VIT_08s0056g00290.t01 | Wine grape | cytosol, mitochondrion | 45.4 | 38.54 |
| CDY14927 | Canola | cytosol | 42.94 | 38.46 |
| Bra039511.1-P | Field mustard | cytosol | 42.94 | 38.46 |
| Solyc10g074740.1.1 | Tomato | cytosol, plastid | 45.4 | 37.19 |
| CDX96968 | Canola | cytosol | 43.56 | 36.79 |
| PGSC0003DMT400071219 | Potato | cytosol, plastid | 44.79 | 36.68 |
| TraesCS7D01G045800.1 | Wheat | cytosol | 34.97 | 32.95 |
| CDX98672 | Canola | cytosol | 49.08 | 31.5 |
| Bra038801.1-P | Field mustard | cytosol | 49.08 | 30.65 |
| TraesCS3D01G484900.1 | Wheat | cytosol, mitochondrion | 32.52 | 28.49 |
| TraesCS3D01G041500.1 | Wheat | cytosol | 31.9 | 28.11 |
| TraesCS1D01G125800.1 | Wheat | cytosol | 29.45 | 27.91 |
| TraesCS3D01G483200.1 | Wheat | cytosol, plastid | 32.52 | 27.75 |
| TraesCS1D01G239000.1 | Wheat | mitochondrion | 31.9 | 27.51 |
| TraesCS2D01G347500.1 | Wheat | plastid | 36.81 | 27.27 |
| TraesCS7D01G132700.1 | Wheat | endoplasmic reticulum | 38.04 | 26.84 |
| TraesCS5D01G141900.1 | Wheat | plastid | 26.99 | 24.04 |
| TraesCS5D01G246000.1 | Wheat | mitochondrion | 25.77 | 22.95 |
| TraesCS3D01G041400.1 | Wheat | cytosol, plastid | 31.9 | 21.85 |
| TraesCS3D01G484600.1 | Wheat | cytosol, plastid | 24.54 | 20.51 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G348900.1 | EnsemblPlantsGene:TraesCS5D01G348900 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR45003 | PANTHER:PTHR45003:SF1 |
| PFAM:PF13405 | PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 |
| SUPFAM:SSF47473 | TIGR:cd00051 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:434363433..434364192
Molecular Weight (calculated)
17513.6 Da
IEP (calculated)
4.471
GRAVY (calculated)
-0.267
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTAPPQANH QQQQQQRHRR LRVRRVFDLF DHDGDGVITA AELSGALGRL GLALGAQADG LVAAYVAPGM PGLRFADFEA LHAELGGGGE EDEEAEMREA
101: FAVFDENGDG YISAAELQAV LERMGVPEAA CMARVQGMIA AHDRDSDGRV DFHEFKAMMA AGM
101: FAVFDENGDG YISAAELQAV LERMGVPEAA CMARVQGMIA AHDRDSDGRV DFHEFKAMMA AGM
001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
Arabidopsis Description
CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.