Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013470.1-P | Field mustard | cytosol | 84.82 | 86.17 |
| CDX79002 | Canola | cytosol | 84.82 | 86.17 |
| CDX94006 | Canola | cytosol | 83.77 | 86.02 |
| CDX82773 | Canola | cytosol | 85.86 | 85.86 |
| CDY31433 | Canola | cytosol, plastid | 79.06 | 82.07 |
| Bra020916.1-P | Field mustard | cytosol, plastid | 78.53 | 81.52 |
| CDX76451 | Canola | cytosol, plastid | 78.53 | 81.52 |
| AT5G44460.1 | Thale cress | cytosol | 74.87 | 79.01 |
| VIT_08s0056g00290.t01 | Wine grape | cytosol, mitochondrion | 62.83 | 62.5 |
| CDX98672 | Canola | cytosol | 82.2 | 61.81 |
| Solyc10g074740.1.1 | Tomato | cytosol, plastid | 63.35 | 60.8 |
| Bra038801.1-P | Field mustard | cytosol | 82.72 | 60.54 |
| PGSC0003DMT400071219 | Potato | cytosol, plastid | 62.83 | 60.3 |
| KRH40630 | Soybean | mitochondrion | 56.02 | 58.47 |
| GSMUA_Achr8P01570_001 | Banana | cytosol | 54.97 | 56.76 |
| Zm00001d029028_P001 | Maize | plastid | 52.88 | 53.72 |
| Zm00001d047535_P001 | Maize | plastid | 51.31 | 52.41 |
| EER92319 | Sorghum | cytosol | 51.31 | 52.13 |
| Os08t0144100-01 | Rice | plasma membrane | 53.4 | 52.04 |
| KXG39446 | Sorghum | plastid | 51.83 | 51.83 |
| EER97743 | Sorghum | plastid | 53.93 | 51.76 |
| Os03t0331700-02 | Rice | plasma membrane | 51.31 | 51.58 |
| TraesCS7D01G302700.1 | Wheat | plastid | 52.88 | 51.53 |
| TraesCS7A01G306000.1 | Wheat | plastid | 52.36 | 51.02 |
| TraesCS7B01G206200.1 | Wheat | plastid | 52.88 | 51.01 |
| HORVU7Hr1G072770.1 | Barley | plastid | 52.88 | 51.01 |
| TraesCS4D01G174400.1 | Wheat | plastid | 50.26 | 50.79 |
| TraesCS4B01G172400.1 | Wheat | plastid | 49.74 | 50.26 |
| TraesCS4A01G132300.1 | Wheat | plastid | 50.26 | 50.26 |
| Zm00001d022430_P001 | Maize | cytosol, plastid | 51.83 | 49.5 |
| Zm00001d007181_P001 | Maize | plastid | 52.36 | 49.26 |
| HORVU4Hr1G050990.1 | Barley | plastid | 49.74 | 49.22 |
| TraesCS2A01G103600.1 | Wheat | plastid | 49.21 | 49.21 |
| TraesCS2B01G120900.1 | Wheat | plastid | 49.21 | 49.21 |
| TraesCS2D01G103400.1 | Wheat | plastid | 48.69 | 48.69 |
| Os07t0681400-01 | Rice | cytosol | 49.74 | 48.22 |
| TraesCS5D01G348900.1 | Wheat | cytosol | 40.31 | 47.24 |
| TraesCS5A01G343000.1 | Wheat | cytosol, mitochondrion | 40.31 | 46.95 |
| TraesCS5B01G342800.1 | Wheat | cytosol | 39.79 | 46.91 |
| HORVU5Hr1G085800.2 | Barley | cytosol | 40.31 | 44.0 |
| AT1G05990.1 | Thale cress | cytosol | 33.51 | 42.67 |
| Os05t0312600-01 | Rice | cytosol, plastid | 42.93 | 41.62 |
| AT3G07490.1 | Thale cress | cytosol | 32.46 | 40.52 |
| AT4G03290.1 | Thale cress | cytosol | 31.41 | 38.96 |
| AT4G12860.1 | Thale cress | cytosol | 30.89 | 38.82 |
| AT5G37770.1 | Thale cress | cytosol | 28.27 | 33.54 |
| AT1G66400.1 | Thale cress | cytosol | 27.23 | 33.12 |
| AT3G59440.1 | Thale cress | endoplasmic reticulum, extracellular | 32.98 | 32.31 |
| AT2G43290.1 | Thale cress | extracellular | 34.55 | 30.7 |
| AT1G24620.1 | Thale cress | cytosol | 29.84 | 30.65 |
| AT2G15680.1 | Thale cress | plastid | 28.27 | 28.88 |
| AT1G73630.1 | Thale cress | cytosol | 24.61 | 28.83 |
| AT1G18210.1 | Thale cress | cytosol | 25.65 | 28.82 |
| AT2G41410.1 | Thale cress | cytosol, mitochondrion, plastid | 24.08 | 21.3 |
| AT3G10190.1 | Thale cress | cytosol, mitochondrion | 23.04 | 21.05 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | EntrezGene:827826 | UniProt:A0A178UWK5 | ProteinID:AEE84360.1 | EMBL:AK117845 |
| ArrayExpress:AT4G20780 | EnsemblPlantsGene:AT4G20780 | RefSeq:AT4G20780 | TAIR:AT4G20780 | RefSeq:AT4G20780-TAIR-G | EnsemblPlants:AT4G20780.1 |
| TAIR:AT4G20780.1 | EMBL:BT003724 | ProteinID:CAB45844.1 | ProteinID:CAB79078.1 | Symbol:CML42 | InterPro:EF-hand-dom_pair |
| InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010091 | GO:GO:0016043 | GO:GO:0030154 |
| GO:GO:0046872 | InterPro:IPR002048 | RefSeq:NP_193810.1 | ProteinID:OAO97890.1 | PFAM:PF00036 | PFAM:PF13499 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR45003 | PANTHER:PTHR45003:SF2 | UniProt:Q9SVG9 |
| SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI000000C128 | : | : | : |
Description
CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
Coordinates
chr4:-:11133095..11134075
Molecular Weight (calculated)
21148.6 Da
IEP (calculated)
4.333
GRAVY (calculated)
-0.540
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.