Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63788 | Canola | cytosol | 91.33 | 90.73 |
| CDX86544 | Canola | cytosol | 91.33 | 90.73 |
| KRH29625 | Soybean | cytosol | 56.0 | 79.25 |
| AT4G03290.1 | Thale cress | cytosol | 79.33 | 77.27 |
| AT3G07490.1 | Thale cress | cytosol | 74.67 | 73.2 |
| Solyc05g050750.1.1 | Tomato | cytosol, unclear | 71.33 | 71.33 |
| PGSC0003DMT400018016 | Potato | cytosol | 71.33 | 71.33 |
| Solyc11g044920.1.1 | Tomato | cytosol | 56.0 | 69.42 |
| AT4G12860.1 | Thale cress | cytosol | 66.67 | 65.79 |
| AT2G43290.1 | Thale cress | extracellular | 77.33 | 53.95 |
| KRH24625 | Soybean | cytosol | 78.0 | 52.94 |
| VIT_05s0102g00450.t01 | Wine grape | endoplasmic reticulum, golgi | 73.33 | 51.4 |
| AT3G59440.1 | Thale cress | endoplasmic reticulum, extracellular | 66.0 | 50.77 |
| PGSC0003DMT400069195 | Potato | golgi, plastid | 73.33 | 50.23 |
| AT5G37770.1 | Thale cress | cytosol | 42.0 | 39.13 |
| AT1G66400.1 | Thale cress | cytosol | 36.67 | 35.03 |
| AT5G44460.1 | Thale cress | cytosol | 41.33 | 34.25 |
| AT4G20780.1 | Thale cress | cytosol | 42.67 | 33.51 |
| AT1G24620.1 | Thale cress | cytosol | 41.33 | 33.33 |
| AT1G73630.1 | Thale cress | cytosol | 35.33 | 32.52 |
| AT1G18210.1 | Thale cress | cytosol | 35.33 | 31.18 |
| AT2G15680.1 | Thale cress | plastid | 36.0 | 28.88 |
| AT3G10190.1 | Thale cress | cytosol, mitochondrion | 32.67 | 23.45 |
| AT2G41410.1 | Thale cress | cytosol, mitochondrion, plastid | 26.67 | 18.52 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | EntrezGene:837108 | UniProt:A0A178W5D6 | ProteinID:AAF80122.1 | ProteinID:AEE27927.1 |
| EMBL:AF332466 | ArrayExpress:AT1G05990 | EnsemblPlantsGene:AT1G05990 | RefSeq:AT1G05990 | TAIR:AT1G05990 | RefSeq:AT1G05990-TAIR-G |
| EnsemblPlants:AT1G05990.1 | TAIR:AT1G05990.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0046872 | InterPro:IPR002048 | RefSeq:NP_172089.1 |
| ProteinID:OAP12725.1 | PFAM:PF13499 | PO:PO:0000256 | PRINTS:PR01697 | ScanProsite:PS00018 | PFscan:PS50222 |
| PANTHER:PTHR10891 | PANTHER:PTHR10891:SF546 | UniProt:Q9LNE7 | Symbol:RHS1 | SMART:SM00054 | SUPFAM:SSF47473 |
| UniParc:UPI00000A0618 | SEG:seg | : | : | : | : |
Description
CML7Calmodulin-like protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNE7]
Coordinates
chr1:+:1818392..1819184
Molecular Weight (calculated)
16957.1 Da
IEP (calculated)
4.130
GRAVY (calculated)
-0.629
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPTELKRVF QMFDKNGDGT ITGKELSETL RSLGIYIPDK ELTQMIEKID VNGDGCVDID EFGELYKTIM DEEDEEEEDM KEAFNVFDQN GDGFITVDEL
101: KAVLSSLGLK QGKTLDDCKK MIKKVDVDGD GRVNYKEFRQ MMKGGGFNSL
101: KAVLSSLGLK QGKTLDDCKK MIKKVDVDGD GRVNYKEFRQ MMKGGGFNSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.