Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035972.1-P | Field mustard | cytosol | 48.37 | 93.69 |
| CDY23356 | Canola | vacuole | 88.37 | 90.05 |
| Bra034870.1-P | Field mustard | cytosol | 70.23 | 89.35 |
| Bra019554.1-P | Field mustard | cytosol | 70.23 | 89.35 |
| Bra037722.1-P | Field mustard | cytosol | 70.23 | 89.35 |
| CDY30399 | Canola | extracellular | 86.98 | 89.05 |
| CDX83488 | Canola | extracellular | 88.37 | 88.78 |
| AT1G05990.1 | Thale cress | cytosol | 53.95 | 77.33 |
| AT3G59440.1 | Thale cress | endoplasmic reticulum, extracellular | 69.3 | 76.41 |
| KRH29625 | Soybean | cytosol | 35.81 | 72.64 |
| AT3G07490.1 | Thale cress | cytosol | 50.7 | 71.24 |
| PGSC0003DMT400018016 | Potato | cytosol | 47.91 | 68.67 |
| Solyc05g050750.1.1 | Tomato | cytosol, unclear | 47.91 | 68.67 |
| AT4G03290.1 | Thale cress | cytosol | 48.84 | 68.18 |
| CDY44217 | Canola | endoplasmic reticulum, golgi | 86.98 | 66.31 |
| AT4G12860.1 | Thale cress | cytosol | 44.19 | 62.5 |
| VIT_05s0102g00450.t01 | Wine grape | endoplasmic reticulum, golgi | 61.86 | 62.15 |
| Solyc11g044920.1.1 | Tomato | cytosol | 33.95 | 60.33 |
| KRH24625 | Soybean | cytosol | 60.0 | 58.37 |
| PGSC0003DMT400069195 | Potato | golgi, plastid | 57.67 | 56.62 |
| AT5G37770.1 | Thale cress | cytosol | 29.3 | 39.13 |
| AT1G66400.1 | Thale cress | cytosol | 27.44 | 37.58 |
| AT5G44460.1 | Thale cress | cytosol | 30.23 | 35.91 |
| AT4G20780.1 | Thale cress | cytosol | 30.7 | 34.55 |
| AT1G24620.1 | Thale cress | cytosol | 28.84 | 33.33 |
| AT2G15680.1 | Thale cress | plastid | 28.84 | 33.16 |
| AT1G18210.1 | Thale cress | cytosol | 25.58 | 32.35 |
| AT1G73630.1 | Thale cress | cytosol | 23.26 | 30.67 |
| AT3G10190.1 | Thale cress | cytosol, mitochondrion | 24.65 | 25.36 |
| AT2G41410.1 | Thale cress | cytosol, mitochondrion, plastid | 22.33 | 22.22 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | EntrezGene:818931 | UniProt:A0A178VP84 | ProteinID:AAB64310.2 | ProteinID:AAM14938.1 |
| ProteinID:AEC10248.1 | EMBL:AF250344 | ArrayExpress:AT2G43290 | EnsemblPlantsGene:AT2G43290 | RefSeq:AT2G43290 | TAIR:AT2G43290 |
| RefSeq:AT2G43290-TAIR-G | EnsemblPlants:AT2G43290.1 | TAIR:AT2G43290.1 | EMBL:AY062815 | EMBL:AY081574 | EMBL:AY087087 |
| Unigene:At.21047 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0008150 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0031303 | GO:GO:0046872 | InterPro:IPR002048 |
| Symbol:MSS3 | RefSeq:NP_565996.1 | UniProt:O22845 | ProteinID:OAP07634.1 | PFAM:PF13499 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00018 |
| PFscan:PS50222 | PANTHER:PTHR10891 | PANTHER:PTHR10891:SF546 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI000009FE20 |
| SEG:seg | : | : | : | : | : |
Description
CML5MSS3 [Source:UniProtKB/TrEMBL;Acc:A0A178VP84]
Coordinates
chr2:-:17991052..17992047
Molecular Weight (calculated)
24115.6 Da
IEP (calculated)
4.532
GRAVY (calculated)
-0.469
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRIFLLYNI LNSFLLSLVP KKLRTLFPLS WFDKTLHKNS PPSPSTMLPS PSSSSAPTKR IDPSELKRVF QMFDKNGDGR ITKEELNDSL ENLGIYIPDK
101: DLTQMIHKID ANGDGCVDID EFESLYSSIV DEHHNDGETE EEDMKDAFNV FDQDGDGFIT VEELKSVMAS LGLKQGKTLD GCKKMIMQVD ADGDGRVNYK
201: EFLQMMKGGG FSSSN
101: DLTQMIHKID ANGDGCVDID EFESLYSSIV DEHHNDGETE EEDMKDAFNV FDQDGDGFIT VEELKSVMAS LGLKQGKTLD GCKKMIMQVD ADGDGRVNYK
201: EFLQMMKGGG FSSSN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.