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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • plasma membrane 1
  • vacuole 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, unclear
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, vacuole
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plasma membrane, vacuole
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400018016 Potato cytosol 98.67 98.67
KRH29625 Soybean cytosol 54.0 76.42
Solyc06g083000.1.1 Tomato cytosol 73.33 73.83
AT1G05990.1 Thale cress cytosol 71.33 71.33
CDY63788 Canola cytosol 70.0 69.54
CDX86544 Canola cytosol 70.0 69.54
Solyc09g055880.1.1 Tomato cytosol 67.33 67.33
Solyc11g044920.1.1 Tomato cytosol 52.67 65.29
Bra000836.1-P Field mustard cytosol 66.67 64.94
CDX90890 Canola cytosol 66.67 64.94
KRH23209 Soybean cytosol, mitochondrion 78.67 64.13
CDY22119 Canola cytosol 62.67 61.84
AT4G03290.1 Thale cress cytosol 63.33 61.69
Bra035972.1-P Field mustard cytosol 45.33 61.26
CDY21953 Canola cytosol 61.33 60.53
Bra019554.1-P Field mustard cytosol 64.67 57.4
Bra034870.1-P Field mustard cytosol 64.67 57.4
Bra037722.1-P Field mustard cytosol 64.67 57.4
CDY17950 Canola cytosol 62.67 56.63
KRH10131 Soybean endoplasmic reticulum 78.67 55.92
VIT_05s0102g00450.t01 Wine grape endoplasmic reticulum, golgi 78.0 54.67
CDY06002 Canola extracellular, vacuole 68.0 51.52
Bra007450.1-P Field mustard endoplasmic reticulum, vacuole 68.0 51.52
KRH24625 Soybean cytosol 75.33 51.13
CDY72611 Canola extracellular, vacuole 68.0 51.0
AT3G59440.1 Thale cress endoplasmic reticulum, extracellular 66.0 50.77
CDX67796 Canola vacuole 66.67 49.26
CDX98375 Canola endoplasmic reticulum 66.67 49.02
Bra003376.1-P Field mustard vacuole 66.0 48.77
AT2G43290.1 Thale cress extracellular 68.67 47.91
CDY30399 Canola extracellular 64.67 46.19
CDY23356 Canola vacuole 64.0 45.5
CDX83488 Canola extracellular 64.0 44.86
Solyc02g091500.1.1 Tomato cytosol 40.67 39.1
Solyc06g068960.1.1 Tomato endoplasmic reticulum, unclear 39.33 38.31
Solyc02g063350.1.1 Tomato cytosol 36.67 37.93
Solyc07g007950.1.1 Tomato endoplasmic reticulum, extracellular, golgi 52.0 35.14
Solyc01g005370.2.1 Tomato cytosol 39.33 34.3
CDY44217 Canola endoplasmic reticulum, golgi 63.33 33.69
Solyc03g118810.1.1 Tomato cytosol 36.67 33.54
Solyc04g008000.2.1 Tomato cytosol, plastid 41.33 32.46
Solyc02g065000.1.1 Tomato cytosol 36.0 31.21
Solyc10g074740.1.1 Tomato cytosol, plastid 38.0 28.64
Solyc01g108190.2.1 Tomato plastid 34.67 28.11
Solyc10g079420.1.1 Tomato nucleus, plastid 37.33 27.32
Solyc04g018110.1.1 Tomato plastid 36.0 22.31
Protein Annotations
EnsemblPlants:Solyc05g050750.1.1EnsemblPlantsGene:Solyc05g050750.1Gene3D:1.10.238.10GO:GO:0003674GO:GO:0005488GO:GO:0005509
InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_domInterPro:IPR002048PANTHER:PTHR10891PANTHER:PTHR10891:SF546
PFAM:PF13499PFscan:PS50222PRINTS:PR01697ScanProsite:PS00018SEG:segSMART:SM00054
SUPFAM:SSF47473UniParc:UPI0002767231UniProt:K4C1A7MapMan:35.1::
Description
No Description!
Coordinates
chr5:-:60883256..60883708
Molecular Weight (calculated)
17004.1 Da
IEP (calculated)
4.099
GRAVY (calculated)
-0.512
Length
150 amino acids
Sequence
(BLAST)
001: METDELKRVF HMFDRNGDGR ITKKELNDSL ENMGIFMSDS DLAQMINKID VNGDGYIDID EFGALYETIM EERDEEEDIR EAFNVFDQNG DGYITVDELK
101: SVLASLGLKQ GRTVDDCKRM IKKVDADGDG MVNFIEFKQM MKSGGFAALS
Best Arabidopsis Sequence Match ( AT3G07490.1 )
(BLAST)
001: MDQAELARIF QMFDRNGDGK ITKQELNDSL ENLGIYIPDK DLVQMIEKID LNGDGYVDIE EFGGLYQTIM EERDEEEDMR EAFNVFDQNR DGFITVEELR
101: SVLASLGLKQ GRTLEDCKRM ISKVDVDGDG MVNFKEFKQM MKGGGFAALG SNL
Arabidopsis Description
CML3CML3 [Source:UniProtKB/TrEMBL;Acc:A0A178V7U1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.