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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, unclear

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • vacuole 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, unclear
Any Predictor:cytosol, mitochondrion, nucleus, vacuole
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
 unclear: 26455813
endoplasmic reticulum: 29145071
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400074098 Potato cytosol 97.4 97.4
Solyc03g118810.1.1 Tomato cytosol 71.43 67.07
Solyc02g063350.1.1 Tomato cytosol 52.6 55.86
Solyc02g091500.1.1 Tomato cytosol 53.9 53.21
KRH41828 Soybean cytosol 60.39 51.67
KRH48613 Soybean cytosol 57.14 49.16
AT1G18210.1 Thale cress cytosol 53.9 48.82
Bra025924.1-P Field mustard cytosol 51.95 47.9
CDY70127 Canola cytosol 51.95 47.9
KRH24162 Soybean cytosol 43.51 47.86
HORVU4Hr1G081250.1 Barley cytosol 18.83 47.54
TraesCS1A01G134000.1 Wheat cytosol 52.6 47.09
TraesCS1B01G148000.1 Wheat cytosol 52.6 47.09
TraesCS1D01G125800.1 Wheat cytosol 52.6 47.09
AT1G73630.1 Thale cress cytosol 49.35 46.63
Bra016564.1-P Field mustard cytosol 52.6 46.55
KRH15405 Soybean cytosol 43.51 46.53
KRH02767 Soybean cytosol 45.45 46.05
CDX96729 Canola cytosol 51.95 45.98
Bra015979.1-P Field mustard cytosol 47.4 45.91
CDX72996 Canola cytosol 47.4 45.91
CDX96488 Canola cytosol 47.4 45.91
CDY19196 Canola cytosol 52.6 45.76
CDX83860 Canola cytosol 51.95 45.2
GSMUA_Achr8P17950_001 Banana cytosol, plastid 50.0 43.5
EES19251 Sorghum cytosol 50.0 43.02
GSMUA_Achr11P... Banana cytosol, plastid 47.4 42.44
Os05t0223000-01 Rice plasma membrane 51.95 42.33
KRH60530 Soybean plastid 59.09 42.13
Os01t0135700-01 Rice plasma membrane 47.4 40.33
HORVU3Hr1G007420.1 Barley cytosol 48.05 39.78
Solyc05g050750.1.1 Tomato cytosol, unclear 38.31 39.33
KRH16247 Soybean cytosol 32.47 38.17
TraesCS3D01G041500.1 Wheat cytosol 45.45 37.84
TraesCS3A01G038300.1 Wheat cytosol 45.45 37.63
Solyc06g083000.1.1 Tomato cytosol 36.36 37.58
TraesCS3B01G045500.1 Wheat cytosol 44.81 36.9
Solyc09g055880.1.1 Tomato cytosol 35.06 36.0
HORVU1Hr1G029850.1 Barley cytosol 51.95 35.09
EES00360 Sorghum cytosol 46.75 34.95
HORVU1Hr1G074240.1 Barley cytosol, plastid 33.77 34.67
Solyc01g005370.2.1 Tomato cytosol 38.31 34.3
HORVU6Hr1G076690.1 Barley cytosol 33.12 34.0
HORVU5Hr1G018360.1 Barley cytosol, plastid 33.12 33.77
Zm00001d008573_P001 Maize plastid 44.81 33.66
Zm00001d039944_P001 Maize cytosol, plastid 42.21 33.33
HORVU6Hr1G034200.1 Barley cytosol, plastid 34.42 33.33
HORVU7Hr1G029640.1 Barley cytosol, plastid 33.77 33.12
HORVU7Hr1G101640.1 Barley cytosol, plastid 32.47 32.89
Solyc04g008000.2.1 Tomato cytosol, plastid 40.26 32.46
Solyc01g108190.2.1 Tomato plastid 38.96 32.43
Solyc02g065000.1.1 Tomato cytosol 36.36 32.37
Solyc11g044920.1.1 Tomato cytosol 25.32 32.23
HORVU0Hr1G031990.1 Barley cytosol, plastid 32.47 31.65
GSMUA_Achr6P09820_001 Banana cytosol 53.25 31.42
HORVU4Hr1G032570.1 Barley cytosol, plastid 30.52 31.33
HORVU4Hr1G085560.1 Barley cytosol, plastid 35.71 31.07
HORVU5Hr1G117570.1 Barley cytosol 25.32 30.0
TraesCS3D01G041400.1 Wheat cytosol, plastid 46.1 29.83
HORVU1Hr1G023720.1 Barley cytosol, plastid 30.52 29.38
HORVU5Hr1G077930.1 Barley cytosol 27.92 28.86
Solyc10g079420.1.1 Tomato nucleus, plastid 37.01 27.8
Solyc07g007950.1.1 Tomato endoplasmic reticulum, extracellular, golgi 39.61 27.48
Solyc10g074740.1.1 Tomato cytosol, plastid 32.47 25.13
Solyc04g018110.1.1 Tomato plastid 35.06 22.31
HORVU5Hr1G073590.1 Barley cytosol, plastid 24.68 20.88
Protein Annotations
EnsemblPlants:Solyc06g068960.1.1EnsemblPlantsGene:Solyc06g068960.1Gene3D:1.10.238.10GO:GO:0003674GO:GO:0005488GO:GO:0005509
InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_domInterPro:IPR002048PANTHER:PTHR10891PANTHER:PTHR10891:SF737
PFAM:PF13499PFscan:PS50222ScanProsite:PS00018SMART:SM00054SUPFAM:SSF47473UniParc:UPI0002766776
UniProt:K4C869MapMan:35.1::::
Description
No Description!
Coordinates
chr6:+:42782090..42782554
Molecular Weight (calculated)
17010.9 Da
IEP (calculated)
4.111
GRAVY (calculated)
-0.533
Length
154 amino acids
Sequence
(BLAST)
001: MATEGPKPCV YLQDMEEVKK VFARFDANGD GMISGDELSG VLKALGSDTS PEEVARMMAE IDTDKDGCIN LDEFADFCKN DESVDGGAKE LKEAFDLYDQ
101: DHNGRISATE LHQILNRLGQ NCTLQDCTRM ITSVDANGDG YVCFEEFKKM MGNK
Best Arabidopsis Sequence Match ( AT1G18210.2 )
(BLAST)
001: MASANPETAK PTPATVDMAN PEELKKVFDQ FDSNGDGKIS VLELGGVFKA MGTSYTETEL NRVLEEVDTD RDGYINLDEF STLCRSSSSA AEIRDAFDLY
101: DQDKNGLISA SELHQVLNRL GMSCSVEDCT RMIGPVDADG DGNVNFEEFQ KMMTSSSLLN SNGSAAPPST
Arabidopsis Description
CML27Probable calcium-binding protein CML27 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE22]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.