Factsheet for GSMUA_Achr11P13360_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 2
vacuole 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P17950_001	Banana	cytosol, plastid	65.7	63.84
PGSC0003DMT400014742	Potato	cytosol	45.35	47.56
PGSC0003DMT400074098	Potato	cytosol	42.44	47.4
Solyc06g068960.1.1	Tomato	endoplasmic reticulum, unclear	42.44	47.4
Solyc03g118810.1.1	Tomato	cytosol	44.19	46.34
TraesCS1D01G125800.1	Wheat	cytosol	45.35	45.35
TraesCS1B01G148000.1	Wheat	cytosol	45.35	45.35
TraesCS1A01G134000.1	Wheat	cytosol	45.35	45.35
GSMUA_Achr6P28770_001	Banana	cytosol	36.05	41.33
Os05t0223000-01	Rice	plasma membrane	45.35	41.27
GSMUA_Achr3P16870_001	Banana	cytosol	36.05	41.06
KRH48613	Soybean	cytosol	42.44	40.78
GSMUA_Achr8P28890_001	Banana	cytosol	35.47	40.67
EES19251	Sorghum	cytosol	41.86	40.22
CDY70127	Canola	cytosol	38.95	40.12
Bra025924.1-P	Field mustard	cytosol	38.95	40.12
GSMUA_Achr2P05840_001	Banana	cytosol	34.3	39.33
KRH24162	Soybean	cytosol	31.98	39.29
Bra016564.1-P	Field mustard	cytosol	39.53	39.08
KRH15405	Soybean	cytosol	32.56	38.89
AT1G18210.1	Thale cress	cytosol	38.37	38.82
GSMUA_Achr1P13420_001	Banana	cytosol	33.72	38.67
CDX96488	Canola	cytosol	35.47	38.36
CDX72996	Canola	cytosol	35.47	38.36
Bra015979.1-P	Field mustard	cytosol	35.47	38.36
KRH41828	Soybean	cytosol	40.12	38.33
AT1G73630.1	Thale cress	cytosol	35.47	37.42
CDX96729	Canola	cytosol	37.79	37.36
CDY19196	Canola	cytosol	38.37	37.29
CDX83860	Canola	cytosol	37.79	36.72
KRH16247	Soybean	cytosol	26.74	35.11
KRH02767	Soybean	cytosol	30.23	34.21
HORVU1Hr1G029850.1	Barley	cytosol	44.77	33.77
GSMUA_Achr6P09820_001	Banana	cytosol	50.58	33.33
KRH60530	Soybean	plastid	38.95	31.02
GSMUA_Achr9P07990_001	Banana	endoplasmic reticulum, golgi, plastid	37.79	29.41
GSMUA_Achr8P09680_001	Banana	plastid	33.72	28.71
GSMUA_Achr6P35120_001	Banana	endoplasmic reticulum	35.47	28.11
GSMUA_Achr8P01570_001	Banana	cytosol	30.23	28.11
GSMUA_Achr8P00110_001	Banana	endoplasmic reticulum, golgi	37.79	22.57
GSMUA_Achr9P27060_001	Banana	plastid	25.58	22.34

Protein Annotations

EnsemblPlants:GSMUA_Achr11P13360_001	EnsemblPlants:GSMUA_Achr11T13360_001	EnsemblPlantsGene:GSMUA_Achr11G13360_001	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891
PANTHER:PTHR10891:SF698	PFAM:PF13499	PFscan:PS50222	PRINTS:PR00450	ScanProsite:PS00018	SEG:seg
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI00029484F4	UniProt:M0RRW6	MapMan:35.1	:

Description

Probable calcium-binding protein CML18 [Source:GMGC_GENE;Acc:GSMUA_Achr11G13360_001]

Coordinates

chr11:-:13947007..13947525

Molecular Weight (calculated)

18793.1 Da

IEP (calculated)

4.461

GRAVY (calculated)

-0.412

Length

172 amino acids

Sequence
(BLAST)

001: MAKPQKPSSS RSHSRSSSFS FLRMEELEKI FARFDVDGDG RISTADLSGF IRALGSDASP DEIRDMIAEM DADRDGFVDL QEFAAVCHGG GGGVTEEELK
101: DAFSVYDLNN DGRITVKELH QVLNGLGEKC TMKECIQMIG AVDSDGDGCV SFEEFKMMMT GSAQTTRLQA KK

Best Arabidopsis Sequence Match ( AT1G18210.2 )
(BLAST)

001: MASANPETAK PTPATVDMAN PEELKKVFDQ FDSNGDGKIS VLELGGVFKA MGTSYTETEL NRVLEEVDTD RDGYINLDEF STLCRSSSSA AEIRDAFDLY
101: DQDKNGLISA SELHQVLNRL GMSCSVEDCT RMIGPVDADG DGNVNFEEFQ KMMTSSSLLN SNGSAAPPST

Arabidopsis Description

CML27Probable calcium-binding protein CML27 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.