Factsheet for GSMUA_Achr6P09820_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G134000.1	Wheat	cytosol	39.46	59.88
TraesCS1D01G125800.1	Wheat	cytosol	39.08	59.3
TraesCS1B01G148000.1	Wheat	cytosol	39.08	59.3
GSMUA_Achr8P17950_001	Banana	cytosol, plastid	38.31	56.5
Solyc06g068960.1.1	Tomato	endoplasmic reticulum, unclear	31.42	53.25
PGSC0003DMT400074098	Potato	cytosol	31.42	53.25
EES19251	Sorghum	cytosol	36.4	53.07
PGSC0003DMT400014742	Potato	cytosol	33.33	53.05
Solyc03g118810.1.1	Tomato	cytosol	32.95	52.44
Os05t0223000-01	Rice	plasma membrane	37.55	51.85
GSMUA_Achr11P...	Banana	cytosol, plastid	33.33	50.58
Bra025924.1-P	Field mustard	cytosol	31.42	49.1
CDY70127	Canola	cytosol	31.42	49.1
AT1G18210.1	Thale cress	cytosol	31.42	48.24
AT1G73630.1	Thale cress	cytosol	29.89	47.85
Bra015979.1-P	Field mustard	cytosol	28.74	47.17
CDX96488	Canola	cytosol	28.74	47.17
CDX72996	Canola	cytosol	28.74	47.17
KRH48613	Soybean	cytosol	31.42	45.81
KRH24162	Soybean	cytosol	24.52	45.71
Bra016564.1-P	Field mustard	cytosol	30.27	45.4
CDX96729	Canola	cytosol	30.27	45.4
CDX83860	Canola	cytosol	30.65	45.2
CDY19196	Canola	cytosol	30.65	45.2
KRH41828	Soybean	cytosol	31.03	45.0
GSMUA_Achr3P16870_001	Banana	cytosol	25.67	44.37
GSMUA_Achr8P28890_001	Banana	cytosol	25.29	44.0
HORVU1Hr1G029850.1	Barley	cytosol	37.93	43.42
KRH02767	Soybean	cytosol	24.9	42.76
GSMUA_Achr1P13420_001	Banana	cytosol	24.52	42.67
KRH15405	Soybean	cytosol	23.37	42.36
KRH16247	Soybean	cytosol	21.07	41.98
GSMUA_Achr2P05840_001	Banana	cytosol	23.75	41.33
GSMUA_Achr6P28770_001	Banana	cytosol	23.75	41.33
KRH60530	Soybean	plastid	33.33	40.28
GSMUA_Achr8P09680_001	Banana	plastid	24.9	32.18
GSMUA_Achr8P01570_001	Banana	cytosol	22.61	31.89
GSMUA_Achr9P07990_001	Banana	endoplasmic reticulum, golgi, plastid	26.05	30.77
GSMUA_Achr6P35120_001	Banana	endoplasmic reticulum	24.52	29.49
GSMUA_Achr8P00110_001	Banana	endoplasmic reticulum, golgi	29.5	26.74
GSMUA_Achr9P27060_001	Banana	plastid	19.92	26.4

Protein Annotations

EnsemblPlants:GSMUA_Achr6P09820_001	EnsemblPlants:GSMUA_Achr6T09820_001	EnsemblPlantsGene:GSMUA_Achr6G09820_001	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891
PANTHER:PTHR10891:SF698	PFAM:PF13499	PFAM:PF13833	PFscan:PS50222	ScanProsite:PS00018	SEG:seg
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002957D41	UniProt:M0T5N1	MapMan:35.1	:

Description

Probable calcium-binding protein CML18 [Source:GMGC_GENE;Acc:GSMUA_Achr6G09820_001]

Coordinates

chr6:-:6603730..6604515

Molecular Weight (calculated)

28681.4 Da

IEP (calculated)

5.975

GRAVY (calculated)

-0.602

Length

261 amino acids

Sequence
(BLAST)

001: MYNRALTHLK AQMDGQVFRK DMVGLHTNNS TLFPATYVRD NASAKRPYPR RTPLNPGSYR ASIYGGVTQF QFRRHRTETM SNAQTSSSTS PSASLFARLN
101: TTDELQKVFD RYDANGDGKI SASELAGVIR ALGADAPPAE VRDMIAEMDA DGDGFVDLHE FADFHRRRVD DAAAERALRE AFDVYDLDGN GLISAEELHR
201: VMNRLGEKCS VKDCSRMIRP VDADGDGNVN FEEFKKMMAN GVGVGRESSA SDPNGPSSSA V

Best Arabidopsis Sequence Match ( AT1G18210.2 )
(BLAST)

001: MASANPETAK PTPATVDMAN PEELKKVFDQ FDSNGDGKIS VLELGGVFKA MGTSYTETEL NRVLEEVDTD RDGYINLDEF STLCRSSSSA AEIRDAFDLY
101: DQDKNGLISA SELHQVLNRL GMSCSVEDCT RMIGPVDADG DGNVNFEEFQ KMMTSSSLLN SNGSAAPPST

Arabidopsis Description

CML27Probable calcium-binding protein CML27 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.