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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 3
  • plasma membrane 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, vacuole
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plasma membrane, vacuole
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G125800.1 Wheat cytosol 74.6 81.98
TraesCS1B01G148000.1 Wheat cytosol 74.6 81.98
TraesCS1A01G134000.1 Wheat cytosol 74.6 81.98
EES19251 Sorghum cytosol 73.55 77.65
HORVU1Hr1G029850.1 Barley cytosol 73.55 60.96
GSMUA_Achr8P17950_001 Banana cytosol, plastid 51.32 54.8
Solyc06g068960.1.1 Tomato endoplasmic reticulum, unclear 42.33 51.95
PGSC0003DMT400074098 Potato cytosol 41.8 51.3
Solyc03g118810.1.1 Tomato cytosol 43.92 50.61
KRH48613 Soybean cytosol 47.62 50.28
PGSC0003DMT400014742 Potato cytosol 43.39 50.0
KRH24162 Soybean cytosol 34.92 47.14
Bra025924.1-P Field mustard cytosol 40.21 45.51
CDY70127 Canola cytosol 40.21 45.51
GSMUA_Achr11P... Banana cytosol, plastid 41.27 45.35
CDX96488 Canola cytosol 38.1 45.28
CDX72996 Canola cytosol 38.1 45.28
Bra015979.1-P Field mustard cytosol 38.1 45.28
KRH02767 Soybean cytosol 35.98 44.74
AT1G18210.1 Thale cress cytosol 40.21 44.71
KRH16247 Soybean cytosol 30.69 44.27
KRH41828 Soybean cytosol 41.8 43.89
KRH15405 Soybean cytosol 33.33 43.75
Os01t0135700-01 Rice plasma membrane 41.8 43.65
AT1G73630.1 Thale cress cytosol 37.57 43.56
CDY19196 Canola cytosol 40.21 42.94
Bra016564.1-P Field mustard cytosol 38.62 41.95
CDX83860 Canola cytosol 38.62 41.24
CDX96729 Canola cytosol 37.57 40.8
Os01t0949500-01 Rice plasma membrane 39.15 40.0
Os05t0380900-01 Rice cytosol, mitochondrion 40.21 37.81
GSMUA_Achr6P09820_001 Banana cytosol 51.85 37.55
KRH60530 Soybean plastid 41.8 36.57
Os12t0228800-01 Rice cytosol 32.28 36.31
Os04t0492800-01 Rice cytosol, mitochondrion, nucleus, plastid 34.39 33.16
Os11t0141400-01 Rice cytosol 29.63 29.79
Os03t0331700-02 Rice plasma membrane 29.1 28.95
Os08t0144100-01 Rice plasma membrane 29.1 28.06
Os07t0681400-01 Rice cytosol 29.1 27.92
Os09t0458700-01 Rice cytosol, mitochondrion 26.98 27.57
Os05t0312600-01 Rice cytosol, plastid 27.51 26.4
Os06t0172200-02 Rice plasma membrane 32.28 25.85
Os12t0138050-00 Rice plastid 31.75 25.21
Os01t0949300-01 Rice plasma membrane 25.4 23.53
Protein Annotations
Gene3D:1.10.238.10MapMan:35.1EntrezGene:9266860UniProt:B9FJ38ProteinID:BAS92875.1ProteinID:EEE62792.1
InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_domGO:GO:0003674GO:GO:0005488GO:GO:0005509
GO:GO:0046872InterPro:IPR002048EnsemblPlantsGene:Os05g0223000EnsemblPlants:Os05t0223000-01PFAM:PF13499ScanProsite:PS00018
PFscan:PS50222PANTHER:PTHR10891PANTHER:PTHR10891:SF698SMART:SM00054SUPFAM:SSF47473UniParc:UPI0000F18F0B
RefSeq:XP_015637715.1SEG:seg::::
Description
CALMODULIN-LIKE PROTEIN 18Similar to TCH2 (TOUCH 2); calcium ion binding. (Os05t0223000-01)
Coordinates
chr5:-:7533744..7534582
Molecular Weight (calculated)
19559.9 Da
IEP (calculated)
4.827
GRAVY (calculated)
-0.546
Length
189 amino acids
Sequence
(BLAST)
001: MASGRGGGGG VASPTPAKVE GGGGGGGGGP GMPMAELEQV FRRYDANGDG KISAEELASV LRALGAPLGP GEVRRMMDEM DSDRDGFVDL SEFAAFHCGP
101: TPAHGGKGGD AKDQEAASEA ELREAFRMYD ADSNGKISAR ELHRVLRQLG DKCSVADCSR MIRSVDADGD GCVNFDEFKK MMGGGGGRR
Best Arabidopsis Sequence Match ( AT5G37770.1 )
(BLAST)
001: MSSKNGVVRS CLGSMDDIKK VFQRFDKNGD GKISVDELKE VIRALSPTAS PEETVTMMKQ FDLDGNGFID LDEFVALFQI GIGGGGNNRN DVSDLKEAFE
101: LYDLDGNGRI SAKELHSVMK NLGEKCSVQD CKKMISKVDI DGDGCVNFDE FKKMMSNGGG A
Arabidopsis Description
CML24TCH2 [Source:UniProtKB/TrEMBL;Acc:A0A178UBB8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.