Factsheet for Os01t0949300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0218200-00
Os05t0210600-01
Os05t0587300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41410.1	Os01t0218200-00	AT2G42580.1	19000166
AT2G41410.1	Os05t0210600-01	AT2G42580.1	19000166
AT2G41410.1	Os05t0587300-01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G488700.1	Wheat	nucleus, plastid	74.51	79.17
TraesCS3B01G536600.1	Wheat	nucleus, plastid	75.98	78.68
TraesCS3D01G484600.1	Wheat	cytosol, plastid	74.51	77.95
EES02048	Sorghum	plastid	66.18	70.68
Zm00001d042108_P001	Maize	cytosol, plastid	64.22	68.23
HORVU3Hr1G106950.3	Barley	cytosol	75.0	56.67
Os11t0141400-01	Rice	cytosol	40.69	44.15
GSMUA_Achr8P09680_001	Banana	plastid	43.63	44.06
Os12t0138050-00	Rice	plastid	42.16	36.13
CDY23852	Canola	cytosol, mitochondrion, plastid	36.27	34.74
Bra016936.1-P	Field mustard	cytosol	17.65	34.29
CDX79938	Canola	cytosol, mitochondrion, plastid	35.78	34.27
Bra004620.1-P	Field mustard	cytosol, mitochondrion, plastid	35.78	34.27
Solyc10g079420.1.1	Tomato	nucleus, plastid	34.31	34.15
PGSC0003DMT400076709	Potato	mitochondrion	35.29	34.12
KRH66816	Soybean	plastid	36.27	33.79
VIT_08s0007g05790.t01	Wine grape	mitochondrion, plastid	36.76	33.78
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	33.82	33.66
CDY06925	Canola	cytosol, mitochondrion, plastid	35.78	33.64
AT3G10190.1	Thale cress	cytosol, mitochondrion	34.31	33.49
KRG95139	Soybean	plastid	35.78	33.49
CDY14768	Canola	cytosol, mitochondrion, plastid	35.29	33.18
CDY60169	Canola	cytosol, plastid	33.33	32.69
AT2G41410.1	Thale cress	cytosol, mitochondrion, plastid	34.31	32.41
Bra029821.1-P	Field mustard	plastid	32.84	32.21
CDY00910	Canola	cytosol, plastid	33.33	31.19
PGSC0003DMT400027581	Potato	cytosol, plastid	30.39	28.7
Os12t0228800-01	Rice	cytosol	23.04	27.98
Os01t0135700-01	Rice	plasma membrane	24.02	27.07
Solyc04g018110.1.1	Tomato	plastid	31.86	26.86
Os01t0949500-01	Rice	plasma membrane	23.53	25.95
Os04t0492800-01	Rice	cytosol, mitochondrion, nucleus, plastid	24.51	25.51
Os05t0223000-01	Rice	plasma membrane	23.53	25.4
Os05t0380900-01	Rice	cytosol, mitochondrion	24.51	24.88
Os09t0458700-01	Rice	cytosol, mitochondrion	21.57	23.78
Os03t0331700-02	Rice	plasma membrane	22.06	23.68
Os08t0144100-01	Rice	plasma membrane	22.55	23.47
Os07t0681400-01	Rice	cytosol	22.55	23.35
Os05t0312600-01	Rice	cytosol, plastid	22.55	23.35
Os06t0172200-02	Rice	plasma membrane	25.0	21.61

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.2	EntrezGene:4325760	EMBL:AK072758	ProteinID:BAB86191.1	ProteinID:BAF07312.1
ProteinID:BAS76224.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:IPR002048	EnsemblPlantsGene:Os01g0949300	EnsemblPlants:Os01t0949300-01	PFAM:PF13499	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR10891	UniProt:Q8RZB7	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000009E036
RefSeq:XP_015647311.1	SEG:seg	:	:	:	:

Description

EF-Hand type domain containing protein. (Os01t0949300-01)

Coordinates

chr1:+:41818382..41819282

Molecular Weight (calculated)

21247.7 Da

IEP (calculated)

4.402

GRAVY (calculated)

-0.374

Length

204 amino acids

Sequence
(BLAST)

001: MKLSIQSFAR KLSLPSPKRT WSSGGGSSKR DGGMSKNGSG VKRAISRSEA SSFASASSES ESSSDDALMA RSTPRSVLPA EISRRELEAV LRRLGHGEPD
101: DEELDAVAAI AAEAEAGGGE DELMEAFKVF DADGDGRITA EELRGVMVAI LGGDGDGCSL DDCRRMIGGV DADGDGFVGF QDFARMMMAA TATATATADG
201: PRSW

Best Arabidopsis Sequence Match ( AT1G24620.1 )
(BLAST)

001: MFNKNQGSNG GSSSNVGIGA DSPYLQKARS GKTEIRELEA VFKKFDVNGD GKISSKELGA IMTSLGHEVP EEELEKAITE IDRKGDGYIN FEEFVELNTK
101: GMDQNDVLEN LKDAFSVYDI DGNGSISAEE LHEVLRSLGD ECSIAECRKM IGGVDKDGDG TIDFEEFKIM MTMGSRRDNV MGGGPR

Arabidopsis Description

CML25Probable calcium-binding protein CML25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.