CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41410.1	CDY42827	AT2G42580.1	19000166
AT2G41410.1	CDY51514	AT2G42580.1	19000166
AT2G41410.1	CDY55390	AT2G42580.1	19000166
AT2G41410.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79938	Canola	cytosol, mitochondrion, plastid	96.71	96.71
AT2G41410.1	Thale cress	cytosol, mitochondrion, plastid	83.57	82.41
CDY06925	Canola	cytosol, mitochondrion, plastid	81.22	79.72
CDY14768	Canola	cytosol, mitochondrion, plastid	79.34	77.88
VIT_08s0007g05790.t01	Wine grape	mitochondrion, plastid	58.22	55.86
KRG95139	Soybean	plastid	54.46	53.21
CDY60169	Canola	cytosol, plastid	51.64	52.88
KRH66816	Soybean	plastid	53.52	52.05
CDY00910	Canola	cytosol, plastid	52.11	50.92
Solyc10g079420.1.1	Tomato	nucleus, plastid	47.42	49.27
TraesCS5B01G134200.1	Wheat	cytosol	20.66	48.89
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	46.95	48.78
PGSC0003DMT400076709	Potato	mitochondrion	46.48	46.92
PGSC0003DMT400027581	Potato	cytosol, plastid	45.54	44.91
GSMUA_Achr8P09680_001	Banana	plastid	41.31	43.56
Solyc04g018110.1.1	Tomato	plastid	47.42	41.74
Os11t0141400-01	Rice	cytosol	34.27	38.83
TraesCS3A01G488700.1	Wheat	nucleus, plastid	34.74	38.54
TraesCS5D01G141900.1	Wheat	plastid	32.86	38.25
HORVU5Hr1G043460.1	Barley	plastid	32.86	38.25
Zm00001d042108_P001	Maize	cytosol, plastid	34.27	38.02
TraesCS3D01G484600.1	Wheat	cytosol, plastid	34.74	37.95
EES16521	Sorghum	plastid	38.03	37.85
TraesCS3B01G536600.1	Wheat	nucleus, plastid	34.74	37.56
Zm00001d004972_P001	Maize	plastid	32.39	36.9
EES02048	Sorghum	plastid	32.86	36.65
Os01t0949300-01	Rice	plasma membrane	34.74	36.27
CDY27652	Canola	cytosol	26.76	35.85
KXG27695	Sorghum	plastid	32.86	35.53
CDX99691	Canola	cytosol	26.29	35.44
CDX96150	Canola	cytosol	24.88	34.64
CDY55679	Canola	cytosol	24.41	33.99
CDY60818	Canola	cytosol	23.47	33.56
CDX96488	Canola	cytosol	24.41	32.7
CDX72996	Canola	cytosol	24.41	32.7
CDY07993	Canola	cytosol	23.47	32.68
Os12t0138050-00	Rice	plastid	36.15	32.35
CDY22119	Canola	cytosol	23.0	32.24
CDX74043	Canola	cytosol	23.0	32.03
CDY63788	Canola	cytosol	22.54	31.79
CDX86544	Canola	cytosol	22.54	31.79
CDY66855	Canola	plastid	28.17	31.75
CDY37233	Canola	plastid	28.17	31.75
CDY33702	Canola	cytosol	22.54	31.58
CDY39714	Canola	cytosol	22.54	31.58
GSMUA_Achr8P00110_001	Banana	endoplasmic reticulum, golgi	42.25	31.25
CDY21953	Canola	cytosol	22.07	30.92
CDX90890	Canola	cytosol	22.07	30.52
CDY03874	Canola	cytosol	26.29	30.43
CDY40786	Canola	cytosol	26.29	30.43
CDY19196	Canola	cytosol	24.88	29.94
CDY70127	Canola	cytosol	23.47	29.94
CDX96729	Canola	cytosol	23.94	29.31
CDX83860	Canola	cytosol	23.94	28.81
CDX84967	Canola	cytosol	25.35	28.57
CDY27574	Canola	cytosol	25.35	28.27
CDY23356	Canola	vacuole	27.7	27.96
CDY36129	Canola	cytosol	24.41	27.81
CDY30399	Canola	extracellular	27.23	27.62
HORVU3Hr1G106950.3	Barley	cytosol	34.27	27.04
CDX94789	Canola	cytosol	23.0	26.92
CDY49013	Canola	cytosol	23.0	26.92
CDY14927	Canola	cytosol	23.0	26.92
CDY06002	Canola	extracellular, vacuole	24.88	26.77
CDX67796	Canola	vacuole	25.35	26.6
CDY17950	Canola	cytosol	20.66	26.51
CDX98375	Canola	endoplasmic reticulum	25.35	26.47
CDY72611	Canola	extracellular, vacuole	24.41	26.0
CDX83488	Canola	extracellular	25.82	25.7
CDY31433	Canola	cytosol, plastid	22.07	25.54
CDX76451	Canola	cytosol, plastid	22.07	25.54
CDX96968	Canola	cytosol	23.0	25.39
CDX94006	Canola	cytosol	22.07	25.27
CDX82773	Canola	cytosol	21.13	23.56
CDX79002	Canola	cytosol	20.66	23.4
CDY44217	Canola	endoplasmic reticulum, golgi	26.29	19.86
CDX98672	Canola	cytosol	23.47	19.68
CDY24421	Canola	endoplasmic reticulum, golgi	24.41	19.19

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078GFE5	UniProt:A0A078GFE5	EnsemblPlants:CDY23852	ProteinID:CDY23852
ProteinID:CDY23852.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	EnsemblPlantsGene:GSBRNA2T00024270001	InterPro:IPR002048	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR10891	PANTHER:PTHR10891:SF739	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EB7C1F	SEG:seg

Description

BnaC04g01850DBnaC04g01850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFE5]

Coordinates

chrLK032150:+:152170..153130

Molecular Weight (calculated)

23178.0 Da

IEP (calculated)

4.371

GRAVY (calculated)

-0.366

Length

213 amino acids

Sequence
(BLAST)

001: MKLAASLKRV FRSKSKGSVS RSEPSSFSSA ASSSSSDGGS YGNLKPGPAA TPVSVLPQSS GDFYSELVEA FKLIDRDDDG VVSRKELAAL LSRLSPEPPS
101: QEEVSMMLRE VDADGCISLE ELASRVAGST SGEGCVETEE MREVFEFFDA DRDGRISAEE LHRVFGVIGD ERCTLEDCVR MIATVDRNGD GFVRFDDFCR
201: MMELQAPAMN DHH

Best Arabidopsis Sequence Match ( AT2G41410.1 )
(BLAST)

001: MKLAASLNRL SPKRLFRTKS KASVSRSEPS SFSSNASSSS SDGSYGNLKQ GPTATPISVL PQNSGDFYTE LVQAFKLIDR DDDGVVSRGD LAALISRLSH
101: EPPSQEEVSL MLREVDGGDG GCISLEDLAS RVAGTSGEGS VETEELREVF EIFDVDRNGK ISAEELHRVF GVIGDERCTL EECMRMIATV DGNGDGFVCF
201: DDFCRMMVPA MNDHHH

Arabidopsis Description

CML35Probable calcium-binding protein CML35 [Source:UniProtKB/Swiss-Prot;Acc:P30188]
SUBAcon: [cytosol,plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.