CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 2
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032677.1-P	Field mustard	cytosol	100.0	100.0
CDY33702	Canola	cytosol	99.34	99.34
AT4G12860.1	Thale cress	cytosol	92.11	92.11
CDY07993	Canola	cytosol	71.71	71.24
CDX74043	Canola	cytosol	71.05	70.59
CDY60818	Canola	cytosol	69.08	70.47
CDY63788	Canola	cytosol	67.11	67.55
CDX86544	Canola	cytosol	67.11	67.55
CDX90890	Canola	cytosol	63.16	62.34
CDY21953	Canola	cytosol	61.84	61.84
CDY22119	Canola	cytosol	61.84	61.84
CDY17950	Canola	cytosol	59.21	54.22
CDY72611	Canola	extracellular, vacuole	61.18	46.5
CDY06002	Canola	extracellular, vacuole	60.53	46.46
CDX67796	Canola	vacuole	61.18	45.81
CDX98375	Canola	endoplasmic reticulum	61.18	45.59
CDY23356	Canola	vacuole	62.5	45.02
CDY30399	Canola	extracellular	61.18	44.29
CDX83488	Canola	extracellular	61.18	43.46
CDX99691	Canola	cytosol	43.42	41.77
CDY27652	Canola	cytosol	43.42	41.51
CDX96150	Canola	cytosol	40.79	40.52
CDY55679	Canola	cytosol	40.13	39.87
CDY70127	Canola	cytosol	40.13	36.53
CDX96488	Canola	cytosol	38.16	36.48
CDX72996	Canola	cytosol	38.16	36.48
CDY19196	Canola	cytosol	39.47	33.9
CDY40786	Canola	cytosol	40.13	33.15
CDY03874	Canola	cytosol	40.13	33.15
CDX83860	Canola	cytosol	38.16	32.77
CDY44217	Canola	endoplasmic reticulum, golgi	59.87	32.27
CDX94006	Canola	cytosol	39.47	32.26
CDX96729	Canola	cytosol	36.84	32.18
CDY36129	Canola	cytosol	39.47	32.09
CDX84967	Canola	cytosol	38.82	31.22
CDY27574	Canola	cytosol	38.82	30.89
CDY14927	Canola	cytosol	36.18	30.22
CDY49013	Canola	cytosol	36.18	30.22
CDX79002	Canola	cytosol	36.84	29.79
CDX94789	Canola	cytosol	35.53	29.67
CDY31433	Canola	cytosol, plastid	35.53	29.35
CDX76451	Canola	cytosol, plastid	35.53	29.35
CDY37233	Canola	plastid	36.18	29.1
CDY66855	Canola	plastid	36.18	29.1
CDX82773	Canola	cytosol	36.18	28.8
CDX96968	Canola	cytosol	35.53	27.98
CDX98672	Canola	cytosol	39.47	23.62
CDY23852	Canola	cytosol, mitochondrion, plastid	31.58	22.54
CDY24421	Canola	endoplasmic reticulum, golgi	39.47	22.14
CDX79938	Canola	cytosol, mitochondrion, plastid	30.92	22.07
CDY06925	Canola	cytosol, mitochondrion, plastid	30.92	21.66
CDY60169	Canola	cytosol, plastid	29.61	21.63
CDY00910	Canola	cytosol, plastid	30.92	21.56
CDY14768	Canola	cytosol, mitochondrion, plastid	29.61	20.74

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078HQV9	UniProt:A0A078HQV9	EnsemblPlants:CDY39714	ProteinID:CDY39714
ProteinID:CDY39714.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	EnsemblPlantsGene:GSBRNA2T00068479001	InterPro:IPR002048	PFAM:PF13499	PRINTS:PR01697	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR10891	PANTHER:PTHR10891:SF662	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002544008
SEG:seg	:	:	:	:	:

Description

BnaA04g07210DBnaA04g07210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQV9]

Coordinates

chrLK032455:-:216754..217212

Molecular Weight (calculated)

17157.4 Da

IEP (calculated)

4.161

GRAVY (calculated)

-0.506

Length

152 amino acids

Sequence
(BLAST)

001: MDSGELSRVF QIFDKNGDGK IAKNELREFF KSVGILIPEK EINEMIAKMD VNGDGFMDID EFGSLYQEMM EENEEEEDMR EAFRVFDQNG DGFITGEELR
101: SVLASMGLKQ GRTLEDCKKM ISKVDVDGDG MVNFKEFKQM MRGGGFAALS SS

Best Arabidopsis Sequence Match ( AT4G12860.1 )
(BLAST)

001: MDRGELSRVF QMFDKNGDGK IAKNELKDFF KSVGIMVPEN EINEMIAKMD VNGDGAMDID EFGSLYQEMV EEKEEEEDMR EAFRVFDQNG DGFITDEELR
101: SVLASMGLKQ GRTLEDCKKM ISKVDVDGDG MVNFKEFKQM MRGGGFAALS SN

Arabidopsis Description

CML2UNE14 [Source:UniProtKB/TrEMBL;Acc:A0A178UUX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.