Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90890 | Canola | cytosol | 84.34 | 90.91 |
| AT4G03290.1 | Thale cress | cytosol | 76.51 | 82.47 |
| CDY21953 | Canola | cytosol | 74.7 | 81.58 |
| CDY22119 | Canola | cytosol | 74.7 | 81.58 |
| CDX86544 | Canola | cytosol | 66.87 | 73.51 |
| CDY63788 | Canola | cytosol | 66.87 | 73.51 |
| CDY60818 | Canola | cytosol | 59.64 | 66.44 |
| CDX74043 | Canola | cytosol | 59.64 | 64.71 |
| CDY07993 | Canola | cytosol | 59.64 | 64.71 |
| KRH29625 | Soybean | cytosol | 40.96 | 64.15 |
| PGSC0003DMT400018016 | Potato | cytosol | 56.63 | 62.67 |
| Solyc05g050750.1.1 | Tomato | cytosol, unclear | 56.63 | 62.67 |
| CDY39714 | Canola | cytosol | 54.22 | 59.21 |
| Solyc11g044920.1.1 | Tomato | cytosol | 42.77 | 58.68 |
| CDY33702 | Canola | cytosol | 53.61 | 58.55 |
| CDY30399 | Canola | extracellular | 61.45 | 48.57 |
| CDY23356 | Canola | vacuole | 61.45 | 48.34 |
| CDX83488 | Canola | extracellular | 61.45 | 47.66 |
| CDY06002 | Canola | extracellular, vacuole | 56.63 | 47.47 |
| CDY72611 | Canola | extracellular, vacuole | 56.63 | 47.0 |
| VIT_05s0102g00450.t01 | Wine grape | endoplasmic reticulum, golgi | 60.24 | 46.73 |
| CDX67796 | Canola | vacuole | 56.63 | 46.31 |
| CDX98375 | Canola | endoplasmic reticulum | 56.63 | 46.08 |
| KRH24625 | Soybean | cytosol | 60.24 | 45.25 |
| PGSC0003DMT400069195 | Potato | golgi, plastid | 58.43 | 44.29 |
| CDY44217 | Canola | endoplasmic reticulum, golgi | 60.84 | 35.82 |
| CDX94006 | Canola | cytosol | 38.55 | 34.41 |
| CDY55679 | Canola | cytosol | 31.33 | 33.99 |
| CDX96150 | Canola | cytosol | 31.33 | 33.99 |
| CDY36129 | Canola | cytosol | 37.35 | 33.16 |
| CDY40786 | Canola | cytosol | 36.75 | 33.15 |
| CDY03874 | Canola | cytosol | 36.75 | 33.15 |
| CDX99691 | Canola | cytosol | 31.33 | 32.91 |
| CDY27652 | Canola | cytosol | 31.33 | 32.7 |
| CDX84967 | Canola | cytosol | 36.75 | 32.28 |
| CDY31433 | Canola | cytosol, plastid | 35.54 | 32.07 |
| CDX76451 | Canola | cytosol, plastid | 35.54 | 32.07 |
| CDY27574 | Canola | cytosol | 36.75 | 31.94 |
| CDX72996 | Canola | cytosol | 30.12 | 31.45 |
| CDX96488 | Canola | cytosol | 30.12 | 31.45 |
| CDY14927 | Canola | cytosol | 34.34 | 31.32 |
| CDX79002 | Canola | cytosol | 34.94 | 30.85 |
| CDX94789 | Canola | cytosol | 33.73 | 30.77 |
| CDX82773 | Canola | cytosol | 34.34 | 29.84 |
| CDY49013 | Canola | cytosol | 32.53 | 29.67 |
| CDX96968 | Canola | cytosol | 33.73 | 29.02 |
| CDX96729 | Canola | cytosol | 29.52 | 28.16 |
| CDY70127 | Canola | cytosol | 28.31 | 28.14 |
| CDY66855 | Canola | plastid | 31.93 | 28.04 |
| CDY37233 | Canola | plastid | 31.33 | 27.51 |
| CDX83860 | Canola | cytosol | 28.92 | 27.12 |
| CDY19196 | Canola | cytosol | 28.92 | 27.12 |
| CDX98672 | Canola | cytosol | 37.95 | 24.8 |
| CDY24421 | Canola | endoplasmic reticulum, golgi | 37.35 | 22.88 |
| CDY60169 | Canola | cytosol, plastid | 28.31 | 22.6 |
| CDY00910 | Canola | cytosol, plastid | 28.92 | 22.02 |
| CDY06925 | Canola | cytosol, mitochondrion, plastid | 27.71 | 21.2 |
| CDX79938 | Canola | cytosol, mitochondrion, plastid | 26.51 | 20.66 |
| CDY23852 | Canola | cytosol, mitochondrion, plastid | 26.51 | 20.66 |
| CDY14768 | Canola | cytosol, mitochondrion, plastid | 26.51 | 20.28 |
Protein Annotations
| EnsemblPlants:CDY17950 | EnsemblPlantsGene:GSBRNA2T00002314001 | Gene3D:1.10.238.10 | GO:A0A078FTV1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR10891 |
| PANTHER:PTHR10891:SF546 | PFAM:PF13499 | PFscan:PS50222 | ProteinID:CDY17950 | ProteinID:CDY17950.1 | ScanProsite:PS00018 |
| SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI0004EEA7A0 | UniProt:A0A078FTV1 | MapMan:35.1 | : |
Description
BnaC03g30220DBnaC03g30220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTV1]
Coordinates
chrLK032080:-:43108..45330
Molecular Weight (calculated)
18926.3 Da
IEP (calculated)
4.296
GRAVY (calculated)
-0.739
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTTELKRVF QMFDKDGDGR ITKKELNDSL KNLGIIIPEK ELGQMIDKID VNGDGCVDIE EFGELYKTIM VEDEDEIGEE DMKEAFNVFD RNGDGFITVD
101: ELKAVLSSLG LKQGKTLEEC RKMLIQVDVD GDGRVDYKEF RQNDEEGSKF NHCFPITSQN KSQKRG
101: ELKAVLSSLG LKQGKTLEEC RKMLIQVDVD GDGRVDYKEF RQNDEEGSKF NHCFPITSQN KSQKRG
001: MDSTELNRVF QMFDKDGDGK ITTKELNESF KNLGIIIPED ELTQIIQKID VNGDGCVDIE EFGELYKTIM VEDEDEVGEE DMKEAFNVFD RNGDGFITVD
101: ELKAVLSSLG LKQGKTLEEC RKMIMQVDVD GDGRVNYMEF RQMMKKGRFF SSLS
101: ELKAVLSSLG LKQGKTLEEC RKMIMQVDVD GDGRVNYMEF RQMMKKGRFF SSLS
Arabidopsis Description
CML6Calmodulin-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.