Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX90890 | Canola | cytosol | 89.61 | 89.61 |
Bra000836.1-P | Field mustard | cytosol | 88.96 | 88.96 |
CDY21953 | Canola | cytosol | 83.12 | 84.21 |
CDY22119 | Canola | cytosol | 83.12 | 84.21 |
AT1G05990.1 | Thale cress | cytosol | 77.27 | 79.33 |
CDY17950 | Canola | cytosol | 82.47 | 76.51 |
KRH29625 | Soybean | cytosol | 48.7 | 70.75 |
AT3G07490.1 | Thale cress | cytosol | 66.23 | 66.67 |
PGSC0003DMT400018016 | Potato | cytosol | 61.69 | 63.33 |
Solyc05g050750.1.1 | Tomato | cytosol, unclear | 61.69 | 63.33 |
AT4G12860.1 | Thale cress | cytosol | 61.69 | 62.5 |
Solyc11g044920.1.1 | Tomato | cytosol | 48.05 | 61.16 |
AT3G59440.1 | Thale cress | endoplasmic reticulum, extracellular | 62.34 | 49.23 |
AT2G43290.1 | Thale cress | extracellular | 68.18 | 48.84 |
VIT_05s0102g00450.t01 | Wine grape | endoplasmic reticulum, golgi | 64.94 | 46.73 |
KRH24625 | Soybean | cytosol | 66.23 | 46.15 |
PGSC0003DMT400069195 | Potato | golgi, plastid | 65.58 | 46.12 |
AT1G24620.1 | Thale cress | cytosol | 42.21 | 34.95 |
AT5G37770.1 | Thale cress | cytosol | 36.36 | 34.78 |
AT1G73630.1 | Thale cress | cytosol | 35.06 | 33.13 |
AT5G44460.1 | Thale cress | cytosol | 37.66 | 32.04 |
AT1G66400.1 | Thale cress | cytosol | 32.47 | 31.85 |
AT1G18210.1 | Thale cress | cytosol | 35.06 | 31.76 |
AT4G20780.1 | Thale cress | cytosol | 38.96 | 31.41 |
AT2G15680.1 | Thale cress | plastid | 35.06 | 28.88 |
AT3G10190.1 | Thale cress | cytosol, mitochondrion | 30.52 | 22.49 |
AT2G41410.1 | Thale cress | cytosol, mitochondrion, plastid | 27.27 | 19.44 |
Protein Annotations
Gene3D:1.10.238.10 | MapMan:35.1 | EntrezGene:827993 | UniProt:A0A178V173 | ProteinID:AAD14457.1 | ProteinID:AEE82303.1 |
ArrayExpress:AT4G03290 | EnsemblPlantsGene:AT4G03290 | RefSeq:AT4G03290 | TAIR:AT4G03290 | RefSeq:AT4G03290-TAIR-G | EnsemblPlants:AT4G03290.1 |
TAIR:AT4G03290.1 | EMBL:BT003938 | EMBL:BT005119 | ProteinID:CAB77814.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS |
InterPro:EF_hand_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009409 |
GO:GO:0009628 | GO:GO:0046872 | InterPro:IPR002048 | RefSeq:NP_192238.1 | ProteinID:OAP00090.1 | PFAM:PF13499 |
PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 |
PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR10891 | PANTHER:PTHR10891:SF546 |
UniProt:Q9ZR02 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI000000C1F1 | SEG:seg | : |
Description
CML6Calmodulin-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR02]
Coordinates
chr4:+:1442546..1443638
Molecular Weight (calculated)
17590.9 Da
IEP (calculated)
4.091
GRAVY (calculated)
-0.486
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSTELNRVF QMFDKDGDGK ITTKELNESF KNLGIIIPED ELTQIIQKID VNGDGCVDIE EFGELYKTIM VEDEDEVGEE DMKEAFNVFD RNGDGFITVD
101: ELKAVLSSLG LKQGKTLEEC RKMIMQVDVD GDGRVNYMEF RQMMKKGRFF SSLS
101: ELKAVLSSLG LKQGKTLEEC RKMIMQVDVD GDGRVNYMEF RQMMKKGRFF SSLS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.