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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90890 Canola cytosol 89.61 89.61
Bra000836.1-P Field mustard cytosol 88.96 88.96
CDY21953 Canola cytosol 83.12 84.21
CDY22119 Canola cytosol 83.12 84.21
AT1G05990.1 Thale cress cytosol 77.27 79.33
CDY17950 Canola cytosol 82.47 76.51
KRH29625 Soybean cytosol 48.7 70.75
AT3G07490.1 Thale cress cytosol 66.23 66.67
PGSC0003DMT400018016 Potato cytosol 61.69 63.33
Solyc05g050750.1.1 Tomato cytosol, unclear 61.69 63.33
AT4G12860.1 Thale cress cytosol 61.69 62.5
Solyc11g044920.1.1 Tomato cytosol 48.05 61.16
AT3G59440.1 Thale cress endoplasmic reticulum, extracellular 62.34 49.23
AT2G43290.1 Thale cress extracellular 68.18 48.84
VIT_05s0102g00450.t01 Wine grape endoplasmic reticulum, golgi 64.94 46.73
KRH24625 Soybean cytosol 66.23 46.15
PGSC0003DMT400069195 Potato golgi, plastid 65.58 46.12
AT1G24620.1 Thale cress cytosol 42.21 34.95
AT5G37770.1 Thale cress cytosol 36.36 34.78
AT1G73630.1 Thale cress cytosol 35.06 33.13
AT5G44460.1 Thale cress cytosol 37.66 32.04
AT1G66400.1 Thale cress cytosol 32.47 31.85
AT1G18210.1 Thale cress cytosol 35.06 31.76
AT4G20780.1 Thale cress cytosol 38.96 31.41
AT2G15680.1 Thale cress plastid 35.06 28.88
AT3G10190.1 Thale cress cytosol, mitochondrion 30.52 22.49
AT2G41410.1 Thale cress cytosol, mitochondrion, plastid 27.27 19.44
Protein Annotations
Gene3D:1.10.238.10MapMan:35.1EntrezGene:827993UniProt:A0A178V173ProteinID:AAD14457.1ProteinID:AEE82303.1
ArrayExpress:AT4G03290EnsemblPlantsGene:AT4G03290RefSeq:AT4G03290TAIR:AT4G03290RefSeq:AT4G03290-TAIR-GEnsemblPlants:AT4G03290.1
TAIR:AT4G03290.1EMBL:BT003938EMBL:BT005119ProteinID:CAB77814.1InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_domGO:GO:0003674GO:GO:0005488GO:GO:0005509GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006950GO:GO:0008150GO:GO:0009409
GO:GO:0009628GO:GO:0046872InterPro:IPR002048RefSeq:NP_192238.1ProteinID:OAP00090.1PFAM:PF13499
PO:PO:0001016PO:PO:0001017PO:PO:0001185PO:PO:0007611PO:PO:0007616PO:PO:0009009
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0025022
PO:PO:0025195PO:PO:0025281ScanProsite:PS00018PFscan:PS50222PANTHER:PTHR10891PANTHER:PTHR10891:SF546
UniProt:Q9ZR02SMART:SM00054SUPFAM:SSF47473UniParc:UPI000000C1F1SEG:seg:
Description
CML6Calmodulin-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR02]
Coordinates
chr4:+:1442546..1443638
Molecular Weight (calculated)
17590.9 Da
IEP (calculated)
4.091
GRAVY (calculated)
-0.486
Length
154 amino acids
Sequence
(BLAST)
001: MDSTELNRVF QMFDKDGDGK ITTKELNESF KNLGIIIPED ELTQIIQKID VNGDGCVDIE EFGELYKTIM VEDEDEVGEE DMKEAFNVFD RNGDGFITVD
101: ELKAVLSSLG LKQGKTLEEC RKMIMQVDVD GDGRVNYMEF RQMMKKGRFF SSLS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.