Factsheet for PGSC0003DMT400069195

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

cytosol 3
plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018016	Potato	cytosol	55.25	80.67
KRH29625	Soybean	cytosol	36.53	75.47
PGSC0003DMT400071189	Potato	cytosol	51.14	75.17
AT1G05990.1	Thale cress	cytosol	50.23	73.33
CDY63788	Canola	cytosol	48.86	70.86
CDX86544	Canola	cytosol	48.86	70.86
KRH10131	Soybean	endoplasmic reticulum	67.12	69.67
Solyc11g044920.1.1	Tomato	cytosol	38.36	69.42
Bra000836.1-P	Field mustard	cytosol	47.49	67.53
CDX90890	Canola	cytosol	47.49	67.53
Bra035972.1-P	Field mustard	cytosol	33.79	66.67
CDY22119	Canola	cytosol	45.66	65.79
KRH23209	Soybean	cytosol, mitochondrion	55.25	65.76
AT4G03290.1	Thale cress	cytosol	46.12	65.58
CDY21953	Canola	cytosol	45.21	65.13
VIT_05s0102g00450.t01	Wine grape	endoplasmic reticulum, golgi	63.47	64.95
Bra037722.1-P	Field mustard	cytosol	49.77	64.5
Bra034870.1-P	Field mustard	cytosol	49.77	64.5
Bra019554.1-P	Field mustard	cytosol	49.77	64.5
CDY23356	Canola	vacuole	58.45	60.66
AT3G59440.1	Thale cress	endoplasmic reticulum, extracellular	53.42	60.0
CDY06002	Canola	extracellular, vacuole	53.88	59.6
Bra007450.1-P	Field mustard	endoplasmic reticulum, vacuole	53.88	59.6
CDX67796	Canola	vacuole	54.79	59.11
Bra003376.1-P	Field mustard	vacuole	54.79	59.11
CDY30399	Canola	extracellular	56.62	59.05
CDY72611	Canola	extracellular, vacuole	53.88	59.0
CDX98375	Canola	endoplasmic reticulum	54.79	58.82
CDY17950	Canola	cytosol	44.29	58.43
AT2G43290.1	Thale cress	extracellular	56.62	57.67
CDX83488	Canola	extracellular	55.25	56.54
KRH24625	Soybean	cytosol	56.16	55.66
PGSC0003DMT400086334	Potato	cytosol	35.16	43.5
CDY44217	Canola	endoplasmic reticulum, golgi	54.79	42.55
PGSC0003DMT400078654	Potato	cytosol	28.31	39.74
PGSC0003DMT400079359	Potato	extracellular, golgi	41.1	38.46
PGSC0003DMT400026987	Potato	cytosol	24.66	37.24
PGSC0003DMT400025178	Potato	cytosol	28.77	36.21
PGSC0003DMT400074098	Potato	cytosol	25.11	35.71
PGSC0003DMT400014742	Potato	cytosol	25.57	34.15
PGSC0003DMT400075801	Potato	plastid	30.14	34.02
PGSC0003DMT400033250	Potato	cytosol	28.31	32.29
PGSC0003DMT400071219	Potato	cytosol, plastid	29.22	32.16
PGSC0003DMT400089961	Potato	cytosol	22.83	28.9
PGSC0003DMT400076709	Potato	mitochondrion	27.4	28.44
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	26.48	28.29
PGSC0003DMT400066610	Potato	plastid	23.74	28.11
PGSC0003DMT400027581	Potato	cytosol, plastid	26.03	26.39

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102598823	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:M1CK26	PFAM:PF13499
EnsemblPlantsGene:PGSC0003DMG400026914	PGSC:PGSC0003DMG400026914	EnsemblPlants:PGSC0003DMT400069195	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10891
PANTHER:PTHR10891:SF546	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002962E52	RefSeq:XP_006347296.1	SEG:seg

Description

Calcium-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026914]

Coordinates

chr6:-:53798488..53799445

Molecular Weight (calculated)

24973.9 Da

IEP (calculated)

4.471

GRAVY (calculated)

-0.335

Length

219 amino acids

Sequence
(BLAST)

001: MQFPAIFFKT RFIYNLFNPI LLSLLPKKLI SFLPPSWFHQ KHLHSRSPAP PQQSPVSVSD AVQSHIQKRM DSDELRRIFQ IFDRNGDGRI TKNELNDSLE
101: NMGIFIPDPE LIEMIEKIDV NGDGCVDIDE FGSLYQTIMD ERDEEEDMRE AFNVFDQNGD GFICVDELKS VLASLGLKQG RTVEDCKQMI NKVDIDGDGM
201: VNFAEFKQMM RGGGFAALS

Best Arabidopsis Sequence Match ( AT2G43290.1 )
(BLAST)

001: MVRIFLLYNI LNSFLLSLVP KKLRTLFPLS WFDKTLHKNS PPSPSTMLPS PSSSSAPTKR IDPSELKRVF QMFDKNGDGR ITKEELNDSL ENLGIYIPDK
101: DLTQMIHKID ANGDGCVDID EFESLYSSIV DEHHNDGETE EEDMKDAFNV FDQDGDGFIT VEELKSVMAS LGLKQGKTLD GCKKMIMQVD ADGDGRVNYK
201: EFLQMMKGGG FSSSN

Arabidopsis Description

CML5MSS3 [Source:UniProtKB/TrEMBL;Acc:A0A178VP84]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.