Factsheet for PGSC0003DMT400089961

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
extracellular 1
mitochondrion 3
cytosol 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g065000.1.1	Tomato	cytosol	97.11	97.11
HORVU5Hr1G068490.1	Barley	cytosol	26.01	52.33
KRH57807	Soybean	plastid	54.34	49.74
KRH04628	Soybean	plastid	53.76	48.95
KRH76994	Soybean	cytosol, plastid	51.45	47.59
PGSC0003DMT400066610	Potato	plastid	49.71	46.49
KRH28478	Soybean	cytosol, plastid	49.13	45.45
PGSC0003DMT400026987	Potato	cytosol	33.53	40.0
GSMUA_Achr9P27060_001	Banana	plastid	42.77	37.56
EER96860	Sorghum	cytosol, mitochondrion	39.88	37.5
TraesCS5D01G246000.1	Wheat	mitochondrion	38.73	36.61
TraesCS5B01G237500.1	Wheat	mitochondrion	38.73	36.61
TraesCS5A01G238900.1	Wheat	mitochondrion	38.15	36.07
PGSC0003DMT400078654	Potato	cytosol	32.37	35.9
PGSC0003DMT400074098	Potato	cytosol	31.79	35.71
PGSC0003DMT400018016	Potato	cytosol	30.64	35.33
PGSC0003DMT400071189	Potato	cytosol	30.06	34.9
Os09t0458700-01	Rice	cytosol, mitochondrion	36.99	34.59
Zm00001d020722_P001	Maize	cytosol, mitochondrion	36.42	34.24
PGSC0003DMT400025178	Potato	cytosol	33.53	33.33
PGSC0003DMT400014742	Potato	cytosol	31.21	32.93
PGSC0003DMT400075801	Potato	plastid	34.1	30.41
PGSC0003DMT400086334	Potato	cytosol	30.06	29.38
PGSC0003DMT400033250	Potato	cytosol	30.06	27.08
PGSC0003DMT400076709	Potato	mitochondrion	31.21	25.59
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	30.06	25.37
PGSC0003DMT400071219	Potato	cytosol, plastid	28.32	24.62
PGSC0003DMT400027581	Potato	cytosol, plastid	30.64	24.54
PGSC0003DMT400069195	Potato	golgi, plastid	28.9	22.83
PGSC0003DMT400079359	Potato	extracellular, golgi	30.64	22.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400089961	EnsemblPlantsGene:PGSC0003DMG400039532	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891	PANTHER:PTHR10891:SF685
PFAM:PF13499	PFscan:PS50222	PGSC:PGSC0003DMG400039532	ScanProsite:PS00018	SMART:SM00054	SUPFAM:SSF47473
UniParc:UPI0002967A0C	UniProt:M1DJA4	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400039532]

Coordinates

chr2:+:23513422..23513943

Molecular Weight (calculated)

19313.1 Da

IEP (calculated)

5.867

GRAVY (calculated)

-0.532

Length

173 amino acids

Sequence
(BLAST)

001: MSKSKRSLHL SKVKQTPSTT SLVHFSPKLE EMKRVFDKFD TNKDGKISKE EYKLAMKMMS SGGGNTKSYE VDDAFQAADT NGDGFINFEE FMRVQSLEGG
101: VNSTDIKSAF KAFDLDGDGK ISAEELLQVQ RMLGEKCSLE SCKKMVRSVD ANGDGLIDMD EFVTMMTRTM KLV

Best Arabidopsis Sequence Match ( AT2G15680.1 )
(BLAST)

001: MSNVSFLELQ YKLSKNKMLR KPSRMFSRDR QSSGLSSPGP GGFSQPSVNE MRRVFSRFDL DKDGKISQTE YKVVLRALGQ ERAIEDVPKI FKAVDLDGDG
101: FIDFREFIDA YKRSGGIRSS DIRNSFWTFD LNGDGKISAE EVMSVLWKLG ERCSLEDCNR MVRAVDADGD GLVNMEEFIK MMSSNNV

Arabidopsis Description

CML30CML30 [Source:UniProtKB/TrEMBL;Acc:A0A178VPG8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.